BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52620.1

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485631 jgi|Araly1|485631|fgenesh2_kg.5__1623__AT3G52620.1         501    1e-141


> Ahg485631 jgi|Araly1|485631|fgenesh2_kg.5__1623__AT3G52620.1
Length=332

 Score =  501 bits (271),  Expect = 1e-141
 Identities = 312/332 (94%), Gaps = 1/332 (0%)
 Strand=Plus/Plus

Query  25   AAAATGGCAACGGATACAACAACTTTTCCTGAAGGCGATGCAGAAGCTGAACTTAATCCT  84
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct  1    AAAATGGCAACGGATACAACAACTTTTCCAGAAGGAGATGCAGAAGCTGAACTAAATCCT  60

Query  85   GGCCAAAACAAGAATTTCGAAGTAGATCCTGTTTCATCAGAGATTGCTTCTGAAAAGGTA  144
            |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  61   GGCCAAAACAAGAATTTCGAAGTAGATCCTGTTTCATCAGAGATTGCTGCTGAGAAGGTA  120

Query  145  CAAAAAATCGTAGAAAAGAGGGAAAACGCAAAGGCAAAGAGAGATGGGGCACGAACGCTT  204
            ||||||| ||| |||||||| ||||||||||||||||||||||| | ||| | |||||||
Sbjct  121  CAAAAAAACGTGGAAAAGAGAGAAAACGCAAAGGCAAAGAGAGACGCGGCGCAAACGCTT  180

Query  205  AAAAACACGATCATAGTATCAGCAGTGATTGTGGCCGTCGCAGGAGCCGCTTTTGCTATA  264
            ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  AAAAAGACGATCATAATATCAGCAGTGATCGTGGCCGTCGCAGGAGCCGCTTTTGCTATA  240

Query  265  ACCAAGAAATTGAAAGAGAATAAATGATCTTATACAAGTTAATTTCTCAATTTTCCTTTG  324
            ||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct  241  ACCAAGAAATTAAAAGAGAATAAATGATTTTATACAAGTTCATTTCTCAAATTTCCTTTG  300

Query  325  TAACTTTT-CTTACATAAGAAATTAAGaaaaa  355
            |||||||| |||||||||||||||||||||||
Sbjct  301  TAACTTTTTCTTACATAAGAAATTAAGAAAAA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13583389684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5