BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52630.1

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485632 jgi|Araly1|485632|fgenesh2_kg.5__1624__AT3G52630.2         538    1e-152


> Ahg485632 jgi|Araly1|485632|fgenesh2_kg.5__1624__AT3G52630.2
Length=477

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 363/397 (91%), Gaps = 8/397 (2%)
 Strand=Plus/Plus

Query  1    ATTTGCAACTCCGACGAACGATTCATCTTCTCCAA-CA--AGAT--AG-CAATGGATACT  54
            ||| ||||||||||||| |||||||||||||||||  |  ||||  ||  ||||||||| 
Sbjct  18   ATTCGCAACTCCGACGAGCGATTCATCTTCTCCAATAAGTAGATAAAGAAAATGGATACA  77

Query  55   TCAAGTCCTTCAGCTTTTGTGAACGGAGCTTTGTTGAGGAGATTCATTGGCCAAAAAGTC  114
            ||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||
Sbjct  78   TCAAGTCCTTCAGCTTTTGTGAACGGAGCTTTGATGAGGCGATACATTGGGCAAAAAGTC  137

Query  115  AGAACTGTGATTCAAGTGACT-GGTTCAGAGATTGGATCTGTGGTTGGCAAATCTACTGA  173
            ||||||||||||||||||| | |||||||| |||||||||||||| || |||||||||||
Sbjct  138  AGAACTGTGATTCAAGTGA-TCGGTTCAGATATTGGATCTGTGGTCGGAAAATCTACTGA  196

Query  174  TGATCTTCAGATCGTTGTTAGAGGATCGTCTCCTCCTTCTCCTCTTACTACTTACCTTGA  233
            ||||||||||||||||||||| ||||| |||||  || ||||||||||||||||||||||
Sbjct  197  TGATCTTCAGATCGTTGTTAGGGGATCTTCTCCGACTCCTCCTCTTACTACTTACCTTGA  256

Query  234  GGTTATTGGAATTGCAGAGAGTGATAACGCTATTCGAGCTGAAACTTGGACCAATTTTGG  293
            ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  257  GGTCATTGGAATTGCTGAGAGTGATAACGCCATTCGAGCTGAAACTTGGACCAATTTTGG  316

Query  294  CAACACTTTTGATACACAGAACTACAACGAGCTATGTAAGCTAGCAAATGGGGAGTTCAA  353
            ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  CAACAGTTTTGATCCACAGAACTACAACGAGCTATGTAAGCTAGCAAATGGGGAGTTCAA  376

Query  354  GCACTTGTTCATCTAATGTTGTGATGATGATTATGAT  390
            |||||||||||||||||| ||||| | ||||| ||||
Sbjct  377  GCACTTGTTCATCTAATGCTGTGAAGGTGATTTTGAT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18009438008


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5