BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52700.1

Length=871
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938156 jgi|Araly1|938156|scaffold_502347.1                        172    3e-42


> Ahg938156 jgi|Araly1|938156|scaffold_502347.1
Length=214

 Score =  172 bits (93),  Expect = 3e-42
 Identities = 128/145 (88%), Gaps = 2/145 (1%)
 Strand=Plus/Plus

Query  97   GCCAGAAAAGAAGAAACAATGCTTGCTG-TTTTCACGAAATCGGTGGCCGGCGTGAAGCT  155
            ||| || |||||||| |||||||||||| |||| | ||| ||||||||||||||||||||
Sbjct  3    GCCGGAGAAGAAGAAGCAATGCTTGCTGTTTTTGA-GAAGTCGGTGGCCGGCGTGAAGCT  61

Query  156  TTTTGGGATGATGTATCCGGTTTTGGAACGTTCGGAGAATCTTCCCACTGATGATTCCAT  215
            ||||||||||| || || ||||  ||||||||||||||||||||||||  |||||||| |
Sbjct  62   TTTTGGGATGACGTTTCTGGTTGGGGAACGTTCGGAGAATCTTCCCACAAATGATTCCGT  121

Query  216  AGACGCCATCAAAGAAATCGCAAAG  240
            | |||||||||||||||| ||||||
Sbjct  122  ATACGCCATCAAAGAAATTGCAAAG  146



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32251987782


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5