BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52700.1 Length=871 Score E Sequences producing significant alignments: (Bits) Value Ahg938156 jgi|Araly1|938156|scaffold_502347.1 172 3e-42 > Ahg938156 jgi|Araly1|938156|scaffold_502347.1 Length=214 Score = 172 bits (93), Expect = 3e-42 Identities = 128/145 (88%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 97 GCCAGAAAAGAAGAAACAATGCTTGCTG-TTTTCACGAAATCGGTGGCCGGCGTGAAGCT 155 ||| || |||||||| |||||||||||| |||| | ||| |||||||||||||||||||| Sbjct 3 GCCGGAGAAGAAGAAGCAATGCTTGCTGTTTTTGA-GAAGTCGGTGGCCGGCGTGAAGCT 61 Query 156 TTTTGGGATGATGTATCCGGTTTTGGAACGTTCGGAGAATCTTCCCACTGATGATTCCAT 215 ||||||||||| || || |||| |||||||||||||||||||||||| |||||||| | Sbjct 62 TTTTGGGATGACGTTTCTGGTTGGGGAACGTTCGGAGAATCTTCCCACAAATGATTCCGT 121 Query 216 AGACGCCATCAAAGAAATCGCAAAG 240 | |||||||||||||||| |||||| Sbjct 122 ATACGCCATCAAAGAAATTGCAAAG 146 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32251987782 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5