BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52710.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938160 jgi|Araly1|938160|scaffold_502351.1 1371 0.0
> Ahg938160 jgi|Araly1|938160|scaffold_502351.1
Length=919
Score = 1371 bits (742), Expect = 0.0
Identities = 855/909 (94%), Gaps = 10/909 (1%)
Strand=Plus/Plus
Query 44 TTTGATTTAAATGCCTCAAGTCGTTGCTTCAGCATGTACCGGTGGGTCTGACCGGAAAAT 103
||||| ||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||
Sbjct 12 TTTGA-TTAAATGCCTCAAGTCGTTTCTTCAGTATGTGCCGGTGGCTCTGACCGGAAAAT 70
Query 104 CTCATGTGAAACTCTGGCCGACGATAACGAAGACTCACCTCATAACTCGAAGATCCGACC 163
|||||| |||||||| ||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 71 CTCATGCGAAACTCTCGCCGACGATAACGAAGACTCAACTCATGACCCGAAGATCCGACC 130
Query 164 CGTATCCATCTCCGCCGTCGATTTTCCACCGGAATCTTACTCTTTATCAAAAGAAGCTCA 223
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 131 CGTTTCCATCTCCGCCGTCGATTTTCCACCGGAATCTTATTCCTTATCAAAAGAAGCTCA 190
Query 224 GCTCGAATGGCTAAACGACAACGCCTTCTTCGAACGCAAAGAATCACAAAAAGGAAACTC 283
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 191 GCTCGAATGGCTAAACGACAACGCTTTCTTCGAACGCAAAGAATCACAAAAAGGAAACTC 250
Query 284 TTCTGCTCC-AA-T----TTCGAATCCCAATACAAACCCTAATTCGAGCTCTCATCGAAT 337
||||||||| || | ||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 251 TTCTGCTCCAAATTCAAATTCGAATCCCAATTCAAACCCTAATTTGAGCTCTCAACGAAT 310
Query 338 CTCACTCAAATCAAAAGCGTCGATCATCAGATTACCGAAACCGCAGAAGACGTGTTTCAA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CTCACTCAAATCAAAAGCGTCGATCATCAGATTACCGAAACCGCAGAAGACGTGTTTCAA 370
Query 398 CGAAGCGAAGAAACGGAGAAATTGCAGAATCGCGAGGACTTTGATGATTCCGAAACGGAT 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGAAGCGAAGAAACGGAGAAATTGCAGAATCGCGAGGACTTTGATGATTCCGAAACGGAT 430
Query 458 CGGGTCGAGATTGAAATCGGATCCTACGTTATCGGAGCCATGTTCTCCCAAGGTTTCTTG 517
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 431 CGGGTCGAGATTGAAATCGGATCCTTCGTTATCGGAGCCGTGTTCTCCGAAGGTTTCTTG 490
Query 518 TATCGGAAGGGTTAGATCTAAACGTGATCGTAGCCGACGAATGCAGAGACAAAAATCCGG 577
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TATCGGAAGAGTTAGATCTAAACGTGATCGTAGCCGACGAATGCAGAGACAAAAATCCGG 550
Query 578 TCGAACCAATTCGTTTAAGGATAAACCGGTTCCGGTTAAGAAGCCTGGTTTTTTCGCTAG 637
||||||| |||| |||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 551 TCGAACCGATTCTTTTAAGGAGAAACCGGTTCGGGTTAAGAAACCTGGTTTTTTCGCTAG 610
Query 638 CTTCAGAGCTATTTTCAGAACCGGTGGCGGTTGCAAAGACTTATCTGCGAGTGGAGCTCA 697
||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 611 CTTCAGAGCGATTTTCAGAACCGGAGGCGGTTGCAAAGACTTATCGGCGAGTGGAGTTCA 670
Query 698 CGCGCCTCGGAGGGATGTCGTAGTCTCTCCGCCGAGAGTTTCGGTGAGAAGATCGACGGA 757
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 671 CGCGCCGCGGAGGGATGCCGTAGTCTCTCCGCCGAGAGTTTCGGTGAGAAGGTCGACGGA 730
Query 758 TATTAGAGGACGGCTTCCGCCGGGAGACGTCGGGAAATCCTCGCCGCAGAGGAATAGTAC 817
||| |||||| |||||||||||| | |||||||||| |||||||||| ||||||||||||
Sbjct 731 TATCAGAGGAAGGCTTCCGCCGGAATACGTCGGGAATTCCTCGCCGCCGAGGAATAGTAC 790
Query 818 CGGTTCGAGGAGATCA--A-TTGACGGCGGTGAACCGGTTCTGCCTGGTTTAGGTGGGAT 874
||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 791 CGGTTCGAGAAGATCATCAATTGACGGTGGTGAACCGGTACTGCCTGGTTTAGGTGGGAT 850
Query 875 GACTCGGTTTACTTCAGGGAGAAGACCGGATTTGTTGGTTGAAGTTTGACGTGGCGTGAC 934
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 851 GACTCGGTTTACTTCGGGGAGAAGACCGGATTTGTTGGTTGACGTTTGACGTGGCGTGAC 910
Query 935 GTACGGCGT 943
|| ||||||
Sbjct 911 GTGCGGCGT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5