BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52720.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485641 jgi|Araly1|485641|fgenesh2_kg.5__1633__AT3G52720.1 1476 0.0
> Ahg485641 jgi|Araly1|485641|fgenesh2_kg.5__1633__AT3G52720.1
Length=1029
Score = 1476 bits (799), Expect = 0.0
Identities = 942/1010 (93%), Gaps = 14/1010 (1%)
Strand=Plus/Plus
Query 22 CTCCACAGAGATTTCCAACAAAACAGGAACTAAAACACAAGATGAAGATTATGATGATGA 81
||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||
Sbjct 30 CTCCACAGAGATTTCCAACAAAACAGGAATTAAAATACAAGATGATGATGATGATGATGA 89
Query 82 TTAAGCTCTGCTTCTTCTCCAT-GTCCCTCATCTGCATTGCACCTGCAGATGCTCAGACA 140
|||||||||||||||| |||| | ||||| |||||||||| |||||| |||||||||||
Sbjct 90 TTAAGCTCTGCTTCTTAGCCATAG-CCCTCCTCTGCATTGCTCCTGCAAATGCTCAGACA 148
Query 141 GAAGGAGTAGTGTTTGGATATAAAGGCAAAAATGGACCAAACCAATGGGGACACTTAAAC 200
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 149 CAAGGAGTAGTGTTTGGATATAAAGGCAAAAATGGACCAAACCAATGGGGACATTTAAAC 208
Query 201 CCTCACTTCACCACATGCGCGGTCGGTAAATTGCAATCTCCAATTGATATTCAAAGGAGG 260
||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 209 CCTCACTTCACCAAATGCGCGGTGGGTAAATTGCAATCTCCAATTGATATCCAAAGGAGA 268
Query 261 CAAATATTTTACAACCACAAATT-GAATTCAATACACCGTGAATACTACTTCACAAACGC 319
||||||||||| |||| || ||| ||| || ||||||| || ||||| |||||||| ||
Sbjct 269 CAAATATTTTATAACCGCAGATTGGAA-TCGCTACACCGCGATTACTATTTCACAAATGC 327
Query 320 AACACTAGTGAACCACGTCTGTAATGTTGCCATGTTCTTCGGGGAGGGAGCAGGAGATGT 379
||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 328 AACGCTGGTGAACCACGTCTGTAATGTTGCGATGTTCTTTGGGGAAGGAGCAGGAGATGT 387
Query 380 GATAATAGAAAACAAGAACTATACCTTACTGCAAATGCATTGGCACACTCCTTCTGAACA 439
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 388 GATAATCGATAATAAGAACTATACCTTACTGCAAATGCATTGGCATACTCCTTCTGAACA 447
Query 440 TCACCTCCATGGAGTCCAATATGCAGCTGAGCTGCACATGGTACACCAAGCAAAAGATGG 499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TCATCTCCATGGAGTCCAATATGCAGCTGAGCTGCACATGGTACACCAAGCAAAAGATGG 507
Query 500 AAGCTTTGCTGTGGTGGCAAGTCTCTTCAAAATCGGCACTGAAGAGCCTTTCCTCTCTCA 559
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 508 AAGCTTTGCTGTGGTGGCAAGTCTCTTCAAAATCGGCACCGAAGAGCCTTTCCTCTCTCA 567
Query 560 GATGAAGGAGAAATTGGTGAAGCTAAAGGAAGAGAGACTCAAAGGGAACCACACAGCACA 619
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 568 GATGAAGGATAAATTGGTGAAGCTAAAGGAAGAGAGATTCAAAGGGAACCAAACAGCACA 627
Query 620 AGTGGAAGTAGGAAGAATCGACACAAGACACATTGAACGTAAGACTCGAAAGTACTACAG 679
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 628 AGTGGAAGTAGGAAGAATCGACACAAGACACATCGAACGTAGGACTCGAAAGTACTTCAG 687
Query 680 ATACATTGGTTCACTCACTACTCCTCCTTGCTCCGAGAACGTTTCTTGGACCATCCTTGG 739
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 ATACGTTGGTTCACTCACTACTCCTCCTTGCTCCGAGAACGTTTCTTGGACCATCCTTGG 747
Query 740 CAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACTCAGATCTCCATTGGACACTTC 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 748 CAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACTCAGATCTCCATTGGATAAATC 807
Query 800 TTTCAAGAACAATTCAAGACCGTGTCAACCCCT-CAACGGCCGGAGAGTTGAGATGTTCC 858
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 808 TTTCAAGAACAATTCAAGACCTTGTCAACCCCTACA-CGGCCGGAGAGTTGAGATGTTCC 866
Query 859 ACGACCACGAGCGTGTCGATaaaaaagaaaccggtaacaaaaagaaaaaacccaattaaa 918
|||||| | |||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 867 ACGACC--G----TGTCGATATAAAAGACACCGGCAACAAAAAGAAAAAACCCAATTAAA 920
Query 919 aTAGTT-TTACATTGTCTATTGGTTTGTTTAGAACCCTAATTAGCTTTGTAAAACTAATA 977
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 ATA-TTGTTACATTGTCTATTGGTTTGTTTAGAACCCTAATTAGCTTTGTAAAACTAATA 979
Query 978 ATCTCTTATGTAGTACTGTGTTGTTGTTTACGACTTGATATACGATTTCC 1027
|||||||||| |||||||||||||||||| ||||||||| | || |||||
Sbjct 980 ATCTCTTATGGAGTACTGTGTTGTTGTTTGCGACTTGATCTTCGTTTTCC 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5