BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52730.1
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938163 jgi|Araly1|938163|scaffold_502354.1 416 7e-116
> Ahg938163 jgi|Araly1|938163|scaffold_502354.1
Length=261
Score = 416 bits (225), Expect = 7e-116
Identities = 250/262 (95%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 78 CTGAAAACAACCAATCAATCATGGAGTACGCTGCTCGGAGAAATCAGAAAGGCGCTTTCG 137
|||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 CTGAAAACAAACGATCAATCATGGATTACACTGCTCGGAGAAATCAGAAAGGCGCTTTCG 60
Query 138 AAGGCTTTTACAAACTTATCATGCGCCGTAATTCCGTCTACGTCACTTTCATCATCGCCG 197
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AAGGCTTTTACAAACTTATCATGCGCCGTAACTCCGTCTACGTCACTTTCATCATCGCCG 120
Query 198 GCGCATTTTTCGGTGAACGGGCTGTGGATTACGGTGTTCATAAGCTCTGGGAACGCAACA 257
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGCATTTTTCGGCGAACGGGCTGTGGATTACGGTGTTCATAAGCTCTGGGAACGCAACA 180
Query 258 ATGTTGGGAAACGATATGAAGACATCTCTGTGTTGGGTCAAAGGCCAGTAGAGGAATGAG 317
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 ATGTTGGGAAACGATATGAAGACATCTCTGTGTTGGGTCAAAGGCCAGTAGAAGAATGAG 240
Query 318 C-TTTCTTCTTTTTGAATTCTC 338
||| | |||||||||| |||
Sbjct 241 GATTTATCCTTTTTGAAT-CTC 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19344883623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5