BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52740.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485645 jgi|Araly1|485645|fgenesh2_kg.5__1637__AT3G52740.1 769 0.0
> Ahg485645 jgi|Araly1|485645|fgenesh2_kg.5__1637__AT3G52740.1
Length=535
Score = 769 bits (416), Expect = 0.0
Identities = 482/512 (94%), Gaps = 12/512 (2%)
Strand=Plus/Plus
Query 84 CTATTGTGTCATCATGATGAACATCGACGATACGACGTCTCCAATGGCCCACCCGATCGG 143
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 32 CTATTGTGTAATCATGATGAACATCGACGATACGACGTCTCCAATGGCTCACCCGATTGG 91
Query 144 TCCATCTCAGCCTCCTTCCGACCAAACCAAACAAGATCCGCCAAGTTTGCCCCA-AGAAG 202
|||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 92 TCCATCTCAGCCTCTTTCCGACCAAACCAAACAAGATCCGCCAAGTTTG-CCCAGCGAAG 150
Query 203 CAGCTTCTTCTGTTTCGGCCGACAAGAAAGATCTAGCTTTGCTTGAAGAGAAACCGAAGC 262
||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |
Sbjct 151 CAGCTTCTTCTGTTT---CCGACAAGAAAGATCTAGCTTTACCTGAAGAGAAACCGAAAC 207
Query 263 AGAGTCAAGAAGAAGATAGAGTGGACACTGGGAGAGAGAGGTTAAAGAAGCATCGGAGAG 322
||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 208 AGAATCAAGAAG-AG--AGAGTGGACACTGGGAGAGAGAGGTTAAAGAAGCACCGGAGAG 264
Query 323 AGATCGCTGGTAGGGTTTGGATACCGGAGATATGGGGACAAGAAGAGCTTCTTAAGGATT 382
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 265 AGATCGCCGGTAGGGTTTGGATACCTGAGATATGGGGACAAGAAGAGCTTCTTAAGGATT 324
Query 383 GGATCGATTGTTCAACGTTTGACACGTGTCTAGTCCCTGCCGGAATCTCGTCTGCACGTA 442
|||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 325 GGATCGATTGTTCAGCGTTTGACACATGTCTAGTCCCTGCCGGAATATCGTCTGCACGTG 384
Query 443 CTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTT 444
Query 503 GCTTGATCTTACGTTGAATTTAATATAATAAGATAACATACTTATAAATGTGGTTCTTGT 562
||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 GCTTGATCTTACGCTGAATCTAATATAATAAGATA-CATACTTATAAATGTGGTTCTTGT 503
Query 563 TCCTCAATAATA-TA-A-GGCACTATTGTTAC 591
|||||||||||| || | ||||||||||||||
Sbjct 504 TCCTCAATAATAATATAAGGCACTATTGTTAC 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5