BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52748.1

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323817 jgi|Araly1|323817|fgenesh1_pm.C_scaffold_5001361           318    2e-86


> Ahg323817 jgi|Araly1|323817|fgenesh1_pm.C_scaffold_5001361
Length=222

 Score =  318 bits (172),  Expect = 2e-86
 Identities = 208/225 (92%), Gaps = 3/225 (1%)
 Strand=Plus/Plus

Query  15   ATGAAGAAAACAACAAGACAAGCTTTTCTTCTCCTATGTTTGCTTCATATATTTCTATGT  74
            |||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGAAGAAAACAACCACACAAGCTTTTCTTCTTCTATGTTTGCTTCATATATTTCTATGT  60

Query  75   CTCTCTTTTCATGTTCGTGTCCACCAAGGTAAACCTGAGATATGCGTAAGACCCTCCCCA  134
            || || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTATCCTTTCAGGCTCGTGTCCACCAAGGTAAACCTGAGATATGCGTAAGACCCTCCCCA  120

Query  135  CCATGTGGAGATTCTCCAAAGGGAGGAGGTGAAGATACGCCGGGACATAACTATAAAAAG  194
            ||||||||||||||||| ||||||||   |||||||||||||| || | | |||||||||
Sbjct  121  CCATGTGGAGATTCTCCCAAGGGAGG---TGAAGATACGCCGGCACGTGATTATAAAAAG  177

Query  195  CCTTGCAAACCCATTCCAAGACCACCTCCTCCTCGAGATTGCTAG  239
            ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  178  CCTTGTAAACCCATTCCAAGACCTCCTCCTCCTCGAGATTGCTAG  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15720102668


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5