BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52750.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485646 jgi|Araly1|485646|fgenesh2_kg.5__1638__AT3G52750.1 2603 0.0
Ahg934249 jgi|Araly1|934249|scaffold_402237.1 1123 0.0
> Ahg485646 jgi|Araly1|485646|fgenesh2_kg.5__1638__AT3G52750.1
Length=1766
Score = 2603 bits (1409), Expect = 0.0
Identities = 1663/1783 (93%), Gaps = 28/1783 (2%)
Strand=Plus/Plus
Query 1 AATCCACTTTTATGTGATCGAGAAAGAGATTCTAAGCCCAGAAAACACCAAAACCTTCCA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 AATCCACTTTTATGTGATCGAGAAAGAGATTCTGAGCCCAGAAAACACCAAAA--TT-GG 57
Query 61 TTTTCATTGGTTCCCAtttt-tttttCTTTGTAGCTCG-AAT-TC-TCTGCTGCCACTAC 116
|| || | || | |||| ||||| ||||||||||| ||| || ||||||| | ||||
Sbjct 58 TTCCCA-T--TT--C-TTTTCTTTTTATTTGTAGCTCGAAATCTCTTCTGCTG-CGCTAC 110
Query 117 TCGTAAGTGAAATTGGAGTTTTTAATAGATCTTTGGTTGCTTCTGTAGTCTCAGAATGGC 176
| |||||||||||||||||||| || | ||||||||||| |||||| || ||||||||||
Sbjct 111 TGGTAAGTGAAATTGGAGTTTTGAA-AAATCTTTGGTTGGTTCTGTGGTTTCAGAATGGC 169
Query 177 AGCTTATGTTTCTCCCTGTTTAACTCCTCCGGATTCTCGGGTACTCACTGTTCTTAGAAA 236
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 170 AGCTTATGTTTCTCCCTGTTTAACTCCTCCGGATTCTCGGGTGCTCACTGTTCTTCGAAA 229
Query 237 GAGTGTGTTACCTGATCATCATCTAGGCACGAGGGTTGGTTGCTTAAGAATGAGTGAAGG 296
|||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 230 GAGTGTGTTACCGGAAAATCATCTAGGCACCAGGGTTGGTTGCTTAAGAATGAGTGATGG 289
Query 297 TACTACTAAAAGATATCGTGTTGTTGCTTCTCATAAGTACGAGTCTTCGTCAATCAGAAA 356
||||||||||||||| |||||||| ||||||| | ||||||||||||||| |||||
Sbjct 290 ---TACTAAAAGATATCGACTTGTTGCTGCTCATAAATCCGAGTCTTCGTCAATTAGAAA 346
Query 357 CTCTTTGAATTCTCATAGTACAAGCCATTTCCAAAGCCAAGACTCTTTCTTGAATCTCCA 416
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CTCTCTGAATTCTCATAGTCCAAGCCATTTCCAAAGCCAAGACTCTTTCTTGAATCTCCA 406
Query 417 CCCTGAGATATCCATGCTCAACCCAAGAAAAGAAACTTCCAGTGTTCCCATTACTGAGGA 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CCCTGAGATATCAATGCTCAACCCAAGAAAAGAAACTTCCAGTGTTCCCATTACTGAGGA 466
Query 477 TTTGGATGAGTTATCTACTCCAAACACTTACAATGAGGCTA-GGATTAAAGTTATCGGCG 535
|||||||||||||||||||||||||||||| |||||||| | |||| |||||||||||||
Sbjct 467 TTTGGATGAGTTATCTACTCCAAACACTTATAATGAGGC-ACGGATAAAAGTTATCGGCG 525
Query 536 TTGGAGGTGGTGGTTCAAACGCTGTGAATCGTATGATTGAGAGTGAGATGATTGGTGTGG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTGGAGGTGGTGGTTCAAACGCTGTGAATCGTATGATTGAGAGTGAGATGATTGGTGTGG 585
Query 596 AGTTTTGGATTGTGAATACCGATATCCAAGCAATGAGAATATCTCCGGTTTTTCCAGACA 655
||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 586 AGTTTTGGATTGTAAATACCGATATTCAAGCAATGAGAATGTCTCCGGTTTTCCCAGACA 645
Query 656 ATAGGTTACAAATTGGTAAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGTAATCCAGAGA 715
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 646 ATAGGTTACAGATTGGTAAGGAGTTGACTAGAGGTTTAGGTGCTGGAGGTAATCCTGAGA 705
Query 716 TTGGGATGAATGCTGCTACAGAAAGCAAAGAAGCTATTCAAGAAGCACTTTATGGTTCAG 775
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 706 TTGGAATGAATGCTGCTACAGAAAGCAAAGAAGCTATCCAAGAAGCGCTTTATGGTTCAG 765
Query 776 ATATGGTCTTTGTCACAGCTGGAATGGGTGGTGGAACTGGCACAGGTGGTGCTCCTATAA 835
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 766 ATATGGTCTTTGTCACAGCTGGAATGGGTGGTGGAACCGGCACAGGCGGGGCTCCTATAA 825
Query 836 TTGCAGGGGTTGCAAAAGCGATGGGTATATTAACGGTTGGTATTGTGACAACGCCTTTCT 895
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 826 TTGCAGGGGTTGCAAAAGCGATGGGTATATTGACGGTTGGTATTGTCACAACGCCTTTCT 885
Query 896 CATTTGAGGGACGGAGAAGAGCACTCCAGGCTCAGGAAGGGATTGCAGCCCTCAGAGATA 955
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 886 CATTTGAGGGACGGAGAAGAGCAGTCCAGGCTCAGGAAGGGATTGCAGCCCTCAGAGATA 945
Query 956 ATGTTGACACCCTCATTGTTATTCCAAACGACAAGTTACTAGCAGCAGTCTCTCAGTCTA 1015
|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 946 ATGTTGACACTCTTATTGTTATTCCAAACGACAAGTTACTCGCAGCAGTCTCTCAGTCCA 1005
Query 1016 CTCCAGTTACAGAAGCATTTAATCTGGCAGATGATATACTTCGTCAAGGTGTCCGTGGAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1006 CTCCAGTTACAGAAGCATTTAATCTGGCAGATGATATACTTCGTCAAGGAGTCCGCGGAA 1065
Query 1076 TATCTGATATTATTACGATTCCTGGATTGGTCAATGTGGATTTTGCTGATGTGAGGGCGA 1135
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1066 TATCTGATATCATCACGATTCCTGGATTGGTCAATGTGGATTTTGCTGATGTGAGGGCTA 1125
Query 1136 TAATGGCAAATGCAGGTTCTTCATTGATGGGAATAGGAACTGCAACAGGAAAGACCCGAG 1195
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1126 TAATGGCAAATGCAGGTTCTTCGTTGATGGGAATAGGAACTGCAACAGGAAAGACTCGAG 1185
Query 1196 CAAGAGATGCTGCATTAAACGCAATCCAATCCCCTTTATTAGATATTGGCATTGAGAGAG 1255
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1186 CAAGAGATGCTGCATTAAACGCGATCCAATCACCTTTGTTAGATATTGGCATTGAGAGAG 1245
Query 1256 CCACTGGAATAGTTTGGAACATAACCGGTGGAAGTGACTTAACACTGTTCGAGGTAAATG 1315
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1246 CCACTGGAATTGTTTGGAACATAACTGGTGGAAGTGACTTAACCCTGTTCGAGGTAAATG 1305
Query 1316 CTGCTGCAGAAGTGATTTACGACCTCGTTGATCCAACAGCGAATCTTATATTTGGTGCTG 1375
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 1306 CTGCTGCAGAAGTGATTTACGACCTTGTTGATCCGACAGCCAATCTTATATTTGGTGCTG 1365
Query 1376 TGGTAGATCCATCTTATAGTGGTCAAATAAGTATTACCCTGATAGCAACTGGCTTCAAAC 1435
|||| |||||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1366 TGGTGGATCCATCCTATAGTGGTCAAATAAGTATTACCCTAATAGCAACCGGTTTCAAAC 1425
Query 1436 GCCAAGAAGAAGGAGAAGGGAGGCCACTTCAGGCGACACAAGCGGATGCATCAATGGGAG 1495
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1426 GCCAAGAAGAAGGAGAAGGGAGGCCACTTCAGGCGACGCAAGCGGATGCATCAGTGGGAG 1485
Query 1496 CCACAAGACGTCCTTCATCATCATTCACTGAAGGCAGCTCCATAGAGATCCCAGAGTTCT 1555
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1486 CCACAAGACGTCCTTCTTCATCATTCACTGAAGGCAGTTCCATAGAGATCCCAGAGTTCT 1545
Query 1556 TAAAGAAGAAAGGGCGCTCTCGCTATCCTCGCCTCTAGACCCACTTTGATCACTCTACAT 1615
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1546 TGAAGAAGAAAGGTCGCTCTCGCTATCCTCGCCTCTAGATCCACTTTGATCACTCTAGAT 1605
Query 1616 GATATTGTTGAATGTAAGGAGAAAGAATG-TTTGGTGCGGCTATGTAAATTGCCTCTATG 1674
| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||
Sbjct 1606 AAGATTGTTGAATGTAAGGAGAAGGAATGATTTGGTGTGGCTATGTAAATTGCCTCTCTG 1665
Query 1675 GTGATATTCTATAATAGGTTGTTAGAAATTATTTTACTATATTACAAAAATAATGTTA-- 1732
||||| | || |||||||||||||||||| ||||||||||| ||| | ||||||||||
Sbjct 1666 GTGAT-T-CTTTAATAGGTTGTTAGAAATGATTTTACTATAGTACTATAATAATGTTATT 1723
Query 1733 ---CTTGACAGATGATAAATCTTAGTCTCTGTCACTCTGTTTC 1772
||||||||||||||||||| |||||||| |||||||||||
Sbjct 1724 TGACTTGACAGATGATAAATCTCAGTCTCTGCCACTCTGTTTC 1766
> Ahg934249 jgi|Araly1|934249|scaffold_402237.1
Length=1484
Score = 1123 bits (608), Expect = 0.0
Identities = 982/1163 (84%), Gaps = 23/1163 (2%)
Strand=Plus/Plus
Query 434 TCAACCCAAGAAAAGAAACTTCCAGTGTTCCCATTACTGAGGATTTGGATGAGTTATCTA 493
|||| |||||||| ||||| || || || ||||||||||||| || ||| ||||
Sbjct 301 TCAATCCAAGAAAGGAAACGTCTTCTGGACCTGTTACTGAGGATTTTGAAGAGCCATCTG 360
Query 494 CTCC-A-AACACTTACAATGAGGCTAGGATTAAAGTTATCGGCGTTGGAGGTGGTGGTTC 551
|||| | | || ||||||||||| |||||||||||||| || || ||||||||||| ||
Sbjct 361 CTCCGAGTA-AC-TACAATGAGGCGAGGATTAAAGTTATTGGTGTGGGAGGTGGTGGATC 418
Query 552 AAACGCTGTGAATCGTATGATTGAGAGTGAGATGAT-TGGTGTGGAGTTTTGGATTGTGA 610
||| ||||||||||||||||| |||||||| ||| | || |||||||| ||||||||||
Sbjct 419 AAATGCTGTGAATCGTATGATAGAGAGTGAAATG-TCAGGCGTGGAGTTCTGGATTGTGA 477
Query 611 ATACCGATATCCAAGCAATGAGAATATCTCCGGTTTTTCCAGACAATAGGTTACAAATTG 670
| || |||||||| || |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct 478 ACACTGATATCCAGGCTATGAGAATGTCTCCTGTTTTACCTGATAATAGGTTACAAATTG 537
Query 671 GTAAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGTAATCCAGAGATTGGGATGAATGCTG 730
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 538 GTAAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGGAATCCAGAGATCGGTATGAATGCTG 597
Query 731 CTACAGAAAGCAAAGAAGCTATTCAAGAAGCACTTTATGGTTCAGATATGGTCTTTGTCA 790
||| ||| |||||||||| |||| |||| || || ||||| |||||||||||||||||||
Sbjct 598 CTAGAGAGAGCAAAGAAGTTATTGAAGAGGCTCTCTATGGCTCAGATATGGTCTTTGTCA 657
Query 791 CAGCTGGAATGGGTGGTGGAACTGGCACAGGTGGTGCTCCTATAATTGCAGGGGTTGCAA 850
|||||||||||||||||||||||||||| |||| || ||| |||||||||| |||| |
Sbjct 658 CAGCTGGAATGGGTGGTGGAACTGGCACTGGTGCAGCCCCTGTAATTGCAGGAATTGCCA 717
Query 851 AAGCGATGGGTATATTAACGGTTGGTATTGTGACAACGCCTTTCTCATTTGAGGGACGGA 910
| |||||||||||||| || ||||| |||| |||||||||||||| |||||||| || |
Sbjct 718 AGGCGATGGGTATATTGACAGTTGGCATTGCCACAACGCCTTTCTCGTTTGAGGGTCGAA 777
Query 911 GAAGAGCACTCCAGGCTCAGGAAGGGATTGCAGCCCTCAGAGATAATGTTGACACCCTCA 970
||||| | | ||||| || |||||| ||||| | |||||||| ||||||||||| ||||
Sbjct 778 GAAGAACGGTTCAGGCCCAAGAAGGGCTTGCATCTCTCAGAGACAATGTTGACACTCTCA 837
Query 971 TTGTTATTCCAAACGACAAGTTACT-AGCAGCAGTCTCTCAGTCTACTCCAGTTACAGAA 1029
| || |||||||| ||||||||||| | |||| ||||||||||||||||| || || |||
Sbjct 838 TCGTCATTCCAAATGACAAGTTACTTA-CAGCTGTCTCTCAGTCTACTCCGGTAACGGAA 896
Query 1030 GCATTTAATCTGGCAGATGATATACTTCGTCAAGGTGTCCGTGGAATATCTGATATTATT 1089
||||||||||| || ||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct 897 GCATTTAATCTAGCTGATGATATACTCCGTCAAGGGGTTCGTGGGATATCTGATATCATT 956
Query 1090 ACGATTCCTGGATTGGTCAATGTGGATTTTGCTGATGTGAGGGCGATAATGGCAAATGCA 1149
||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 957 ACGATTCCTGGATTGGTGAATGTGGATTTTGCTGATGTGAGAGCTATAATGGCGAATGCG 1016
Query 1150 GGTTCTTCATTGATGGGAATAGGAACTGCAACAGGAAAGACCCGAGCAAGAGATGCTGCA 1209
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1017 GGGTCTTCATTGATGGGAATAGGAACTGCAACAGGAAAGAGTCGGGCAAGAGATGCTGC- 1075
Query 1210 T-TAAACGCAATCCAATCCCCTTTATTAGATATTGGCATTGAGAGAGCCACTGGAATAGT 1268
| |||| || |||||||| ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1076 TCTAAATGCGATCCAATCACCTTTGTTAGATATTGGGATTGAGAGAGCCACTGGAATTGT 1135
Query 1269 TTGGAACATAACCGGTGGAAGTGACTTAACACTGTTCGAGGTAAATGCTGCTGCAGAAGT 1328
||||||||| || |||||||||||||| ||| |||| ||||||||||||||||| |||||
Sbjct 1136 TTGGAACATTACTGGTGGAAGTGACTTGACATTGTTTGAGGTAAATGCTGCTGCGGAAGT 1195
Query 1329 GATTTACGACCTCGTTGATCCAACAGCGAATCTTATATTTGGTGCTGTGGTAGATCCATC 1388
|| || || || || |||||||| || ||||||||||| |||||||| ||||||||| |
Sbjct 1196 AATATATGATCTTGTCGATCCAACTGCCAATCTTATATTCGGTGCTGTTGTAGATCCAGC 1255
Query 1389 T-TATAGTGGTCAAATAAGTATTACCCTGATAGCAACTGGCTTCAAACGCCAAGAAGAAG 1447
| || |||||| |||| || ||||||||||| || || |||||||| |||||||| |
Sbjct 1256 CCTC-AGCGGTCAAGTAAGCATAACCCTGATAGCTACGGGTTTCAAACGACAAGAAGAGG 1314
Query 1448 GAGAAGG--GAGGCCACTTCAGGCGACACAAGCGGATGCA---TCAATGGGAGCCACAAG 1502
||||||| ||| | ||||| | ||||||| ||||| ||| | ||||| |||||
Sbjct 1315 GAGAAGGACGAG-CGG-TTCAGATGGCACAAGCAGATGCTGCGTCAGTTGGAGCTACAAG 1372
Query 1503 ACGTCCTTCATCATCATTCACTGAAGGCAGCTCCA-TAGAGATCCCAGAGTTCTTAAAGA 1561
| | || || || || || | ||| || | || | | |||||||| |||||||| ||||
Sbjct 1373 AAGACCCTCTTCCTCCTTTAGAGAAAGCGGTTC-AGTGGAGATCCCGGAGTTCTTGAAGA 1431
Query 1562 AGAAAGGGC-GCTCTCGCTATCC 1583
||||||| | ||||||| |||||
Sbjct 1432 AGAAAGG-CAGCTCTCGTTATCC 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5