BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52760.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg485647 jgi|Araly1|485647|fgenesh2_kg.5__1639__AT3G52760.1 1450 0.0 > Ahg485647 jgi|Araly1|485647|fgenesh2_kg.5__1639__AT3G52760.1 Length=1056 Score = 1450 bits (785), Expect = 0.0 Identities = 977/1066 (92%), Gaps = 28/1066 (3%) Strand=Plus/Plus Query 8 AGTCGCCTGTTACTGGAATTATTTTCAATTTCTGAAATCAAATCCGATTGAGAGAAAA-C 66 ||||||||| |||||| | ||||||| ||||| ||||||||||||||||| | |||| | Sbjct 1 AGTCGCCTGATACTGG-A--ATTTTCACTTTCTCAAATCAAATCCGATTGA-AAAAAATC 56 Query 67 ACTAACTTCAAATT-CGAGATCTGAA-TTAGGGAT-TCTAGAGGATGACGAAGGATTTTC 123 || |||| |||| ||||||||||| ||| |||| || ||||||||||||||||||| | Sbjct 57 CCTCTCTTC-AATTCCGAGATCTGAATTTAAGGATCTCAAGAGGATGACGAAGGATTTCC 115 Query 124 CAATTCCACCGGTTGTTTTCCC-CACCAGTGGATCATCTCCGGCCACCGCAAATGTTCAG 182 |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| Sbjct 116 CAATTCCACCGGTTGTTTTCCCTC-CCAGTGGATCATCTCCGGCCACCGCCAATGTTCAG 174 Query 183 CAACGCCGAGTTCCCACAGCTCCTTACCAACCACCACG-TCAATCCTCCGCTTCATCTTC 241 ||||||||||||||||| |||||||||||||||||||| || ||| ||| ||||| ||| Sbjct 175 CAACGCCGAGTTCCCACCGCTCCTTACCAACCACCACGTTC-TTCCCCCGGTTCATTTTC 233 Query 242 AATCCCTTTCATTCCATTTGAAATCGGA---TCCGCCGCCGTTTCAATGCCGGCGGGACC 298 |||||||||||| |||| |||||||||| |||| |||| ||||| |||||| ||||| Sbjct 234 AATCCCTTTCATGCCATCTGAAATCGGATCCTCCGTCGCCACTTCAACGCCGGCCGGACC 293 Query 299 ATTCGA-CGGAACAATCGCTTCATCTGCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTG 357 |||| | |||||||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 294 ATTC-AGCGGAACAATCTCTTCTTCTTCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTG 352 Query 358 AGGATGAGGAGCCTTTACTCGACGAACTCGGTATCCATCCAGATCAAATCTGGAAGAAAA 417 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 353 AAGATGAGGAGCCTTTACTCGACGAGCTCGGTATCCATCCAGATCAAATCTGGAAGAAAA 412 Query 418 CTAGATCGATTCTCAATCCTTTTC-GAATCAATCAGACTGTTCACAAAGATTCAGATCTC 476 ||||||||||||| ||||| ||| | || |||||||||||||||||||||||||| ||| Sbjct 413 CTAGATCGATTCTTAATCC-CTTCAGGATTAATCAGACTGTTCACAAAGATTCAGACCTC 471 Query 477 TCTGGTCCGATCTTCTTATACCTTGCGCTTTGCTTATTTCA-ATTGCTCGCTGGGAAGAT 535 ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct 472 TCTGGTCCGATCTTCTTGTACCTTGCGCTTTGCTTATTTCAGCTT-CTCGCTGGGAAGAT 530 Query 536 ACAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCTTCTATCTTCTTGTACATTGTCTT 595 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 531 TCAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCCTCTATCTTCTTGTACATTGTCTT 590 Query 596 CAATATGCTTGCTGGTAGAAATGGGAATCTTAATCTTCATACTTGTACGAGTTTAGTTGG 655 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 591 CAATATGCTTGCTGGTCGAAATGGGAATCTTAATCTTCATACTTGTACGAGCTTAGTTGG 650 Query 656 TTACTCTCTGCTTCCCGTTGTGATTTTGTCCGCGGTGTCCTTGTTTGTGCCACAAGGTGC 715 ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 651 TTACTCTCTGCTTCCGGTTGTGATTTTGTCGGCGGTGTCGTTGTTTGTGCCACAAGGTGC 710 Query 716 TGGTCCCGTTCGGTTTGTGCTCGGTGCGGCTTTCGTGTTGTGGGCTACTAGAGCTTGTTC 775 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 711 TGGTCCGGTTCGGTTTGTGCTCGGTGCGGCGTTCGTGTTGTGGGCTACTAGAGCTTGTTC 770 Query 776 TAATCTGGTGGTGTCTCTTGCTGATGGAGGAGAAGAGCACCGTGGATTGATTTCGTACGC 835 |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 771 TAATCTGGTGGTGTCTCTTGCTGACGGAGGAGAAGAGCACCGTGGTTTGATATCGTACGC 830 Query 836 CTGTTTCTTAATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGATTCCTTGCTTTCGA 895 ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 831 TTGTTTTTTGATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGATTTCTTGCTTTCGA 890 Query 896 ATATTGATAGAT---T-GTTGAACTTTCCGGTGCCATTACTGAGTAGCTTAATGTGATAT 951 |||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| || Sbjct 891 ATATTGATAGATGGATTGTTGATCTTTCCGGTGCCATTACGGAGTAGCTTAATGTGAAAT 950 Query 952 CTT-ATAAGTGTTTGTGGTGAAATAGCTGAGACATTGTAAAGGTTTTT-GATAACTTTAG 1009 ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 951 CTTGAAAAGTGTTTGTGGTGAAATAGCTGAGACATTGTAAAGGTTTTTTGATAATTTTAG 1010 Query 1010 AGGAAGTTGTTATTGATGTGGTTTAAGTAATTGAAGATGATGTTCT 1055 ||||||||||| ||||| ||||||||||||||| | ||||||||| Sbjct 1011 AGGAAGTTGTTGTTGATATGGTTTAAGTAATTGGATTTGATGTTCT 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5