BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52760.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485647 jgi|Araly1|485647|fgenesh2_kg.5__1639__AT3G52760.1 1450 0.0
> Ahg485647 jgi|Araly1|485647|fgenesh2_kg.5__1639__AT3G52760.1
Length=1056
Score = 1450 bits (785), Expect = 0.0
Identities = 977/1066 (92%), Gaps = 28/1066 (3%)
Strand=Plus/Plus
Query 8 AGTCGCCTGTTACTGGAATTATTTTCAATTTCTGAAATCAAATCCGATTGAGAGAAAA-C 66
||||||||| |||||| | ||||||| ||||| ||||||||||||||||| | |||| |
Sbjct 1 AGTCGCCTGATACTGG-A--ATTTTCACTTTCTCAAATCAAATCCGATTGA-AAAAAATC 56
Query 67 ACTAACTTCAAATT-CGAGATCTGAA-TTAGGGAT-TCTAGAGGATGACGAAGGATTTTC 123
|| |||| |||| ||||||||||| ||| |||| || ||||||||||||||||||| |
Sbjct 57 CCTCTCTTC-AATTCCGAGATCTGAATTTAAGGATCTCAAGAGGATGACGAAGGATTTCC 115
Query 124 CAATTCCACCGGTTGTTTTCCC-CACCAGTGGATCATCTCCGGCCACCGCAAATGTTCAG 182
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 116 CAATTCCACCGGTTGTTTTCCCTC-CCAGTGGATCATCTCCGGCCACCGCCAATGTTCAG 174
Query 183 CAACGCCGAGTTCCCACAGCTCCTTACCAACCACCACG-TCAATCCTCCGCTTCATCTTC 241
||||||||||||||||| |||||||||||||||||||| || ||| ||| ||||| |||
Sbjct 175 CAACGCCGAGTTCCCACCGCTCCTTACCAACCACCACGTTC-TTCCCCCGGTTCATTTTC 233
Query 242 AATCCCTTTCATTCCATTTGAAATCGGA---TCCGCCGCCGTTTCAATGCCGGCGGGACC 298
|||||||||||| |||| |||||||||| |||| |||| ||||| |||||| |||||
Sbjct 234 AATCCCTTTCATGCCATCTGAAATCGGATCCTCCGTCGCCACTTCAACGCCGGCCGGACC 293
Query 299 ATTCGA-CGGAACAATCGCTTCATCTGCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTG 357
|||| | |||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 294 ATTC-AGCGGAACAATCTCTTCTTCTTCATCTTTCGGTAGAGGAGTCTCTGCTTCGTTTG 352
Query 358 AGGATGAGGAGCCTTTACTCGACGAACTCGGTATCCATCCAGATCAAATCTGGAAGAAAA 417
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 353 AAGATGAGGAGCCTTTACTCGACGAGCTCGGTATCCATCCAGATCAAATCTGGAAGAAAA 412
Query 418 CTAGATCGATTCTCAATCCTTTTC-GAATCAATCAGACTGTTCACAAAGATTCAGATCTC 476
||||||||||||| ||||| ||| | || |||||||||||||||||||||||||| |||
Sbjct 413 CTAGATCGATTCTTAATCC-CTTCAGGATTAATCAGACTGTTCACAAAGATTCAGACCTC 471
Query 477 TCTGGTCCGATCTTCTTATACCTTGCGCTTTGCTTATTTCA-ATTGCTCGCTGGGAAGAT 535
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 472 TCTGGTCCGATCTTCTTGTACCTTGCGCTTTGCTTATTTCAGCTT-CTCGCTGGGAAGAT 530
Query 536 ACAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCTTCTATCTTCTTGTACATTGTCTT 595
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 531 TCAGTTTGGTGTTATACTTGGTTGGGTTGTTGTTTCCTCTATCTTCTTGTACATTGTCTT 590
Query 596 CAATATGCTTGCTGGTAGAAATGGGAATCTTAATCTTCATACTTGTACGAGTTTAGTTGG 655
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 591 CAATATGCTTGCTGGTCGAAATGGGAATCTTAATCTTCATACTTGTACGAGCTTAGTTGG 650
Query 656 TTACTCTCTGCTTCCCGTTGTGATTTTGTCCGCGGTGTCCTTGTTTGTGCCACAAGGTGC 715
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 651 TTACTCTCTGCTTCCGGTTGTGATTTTGTCGGCGGTGTCGTTGTTTGTGCCACAAGGTGC 710
Query 716 TGGTCCCGTTCGGTTTGTGCTCGGTGCGGCTTTCGTGTTGTGGGCTACTAGAGCTTGTTC 775
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 711 TGGTCCGGTTCGGTTTGTGCTCGGTGCGGCGTTCGTGTTGTGGGCTACTAGAGCTTGTTC 770
Query 776 TAATCTGGTGGTGTCTCTTGCTGATGGAGGAGAAGAGCACCGTGGATTGATTTCGTACGC 835
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 771 TAATCTGGTGGTGTCTCTTGCTGACGGAGGAGAAGAGCACCGTGGTTTGATATCGTACGC 830
Query 836 CTGTTTCTTAATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGATTCCTTGCTTTCGA 895
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 831 TTGTTTTTTGATCTATACTCTGTTTTCGCTTCTCGTTATCTTTTGATTTCTTGCTTTCGA 890
Query 896 ATATTGATAGAT---T-GTTGAACTTTCCGGTGCCATTACTGAGTAGCTTAATGTGATAT 951
|||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 891 ATATTGATAGATGGATTGTTGATCTTTCCGGTGCCATTACGGAGTAGCTTAATGTGAAAT 950
Query 952 CTT-ATAAGTGTTTGTGGTGAAATAGCTGAGACATTGTAAAGGTTTTT-GATAACTTTAG 1009
||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 951 CTTGAAAAGTGTTTGTGGTGAAATAGCTGAGACATTGTAAAGGTTTTTTGATAATTTTAG 1010
Query 1010 AGGAAGTTGTTATTGATGTGGTTTAAGTAATTGAAGATGATGTTCT 1055
||||||||||| ||||| ||||||||||||||| | |||||||||
Sbjct 1011 AGGAAGTTGTTGTTGATATGGTTTAAGTAATTGGATTTGATGTTCT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5