BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52770.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938167 jgi|Araly1|938167|scaffold_502358.1                        372    1e-102


> Ahg938167 jgi|Araly1|938167|scaffold_502358.1
Length=244

 Score =  372 bits (201),  Expect = 1e-102
 Identities = 226/238 (95%), Gaps = 1/238 (0%)
 Strand=Plus/Plus

Query  95   AGCAAGAAAGCAGAAATGGAGAGGCTAAACTCGAAGCTGTTTGTTGAAAACTGTTACATA  154
            |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct  6    AGCAAGAAAGCAAAAATGGAGAGGCTAAACTCAAAGCTGTATGTAGAAAACTGTTACATA  65

Query  155  ATGAAAGAGAACGAGAGACTAAGGAAGAAAGCTGAGCTTCTGAATCAAGAGAACCAACAG  214
            ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct  66   ATGAAAGAGAACGAGAGGCTGAGGAAGAAAGCTGAGCTTCTGAATCAAGAGAATCAACAG  125

Query  215  CTTTTGTTTCAACTCAAACAGAAACTCTCCAAAACTAAGAACTCTAACAATGGATCAAAC  274
            |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct  126  CTTTTGTTTCAACTCAAACAAAAACTCTCCAAAACTAAGAACCCTAATAATGGATCAAAC  185

Query  275  AATGACAACAAATCAAGCTCTGCTTCTGGACAATCTTGATTTAAA-TCAAGAATACGT  331
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct  186  AATGACAACAAATCAAGCTCTGCTTCTGGACAATCTTGATTTAAAATCAAGAAGACGT  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5