BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52780.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323821 jgi|Araly1|323821|fgenesh1_pm.C_scaffold_5001365 1967 0.0
> Ahg323821 jgi|Araly1|323821|fgenesh1_pm.C_scaffold_5001365
Length=1284
Score = 1967 bits (1065), Expect = 0.0
Identities = 1217/1290 (94%), Gaps = 12/1290 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGGTTTTGGGTTTAGTAGCAATACTGCTTATTGTTTTGGCCGGAAATGTGTTA 60
||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAAGGTTTTGGGTTTAGTGGCCATATTGCTTATTGTTTTGGCCGGAAATGTGTTG 60
Query 61 TCTTATGATCGGCAGGGTACTCGGAAAAATTTAGTGATCCATCCGACTAACGAAGATGAT 120
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCTTATGATCGGCCGGGTACTCGGAAAAATTTAGTGATCCATCCGTCTAACGAAGATGAT 120
Query 121 CCTACGTTCCCCGATCAGGTGCATATATCTCTGGTTGGGCCGGACAAAATGAGAATATCA 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTACGTCCCCCGATCAGGTGCATATATCTCTGGTTGGGCCGGACAAAATGAGAATATCA 180
Query 181 TGGATAACGCAAAGCTCAATC-TCGCC-TAGTGTTGTATATGGCACAGTCTCTGGAAAAT 238
||||| |||||| |||||||| | ||| | ||||||||||||||||||||| |||||||
Sbjct 181 TGGATTACGCAAGGCTCAATCAT-GCCGT-CTGTTGTATATGGCACAGTCTCCGGAAAAT 238
Query 239 ACGAAGGCTCGGCTAATGGAACGTCGTC-ATCGTACCACTACTTGTTGATTTACCGATCG 297
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 239 ACGAAGGCTCGGCTAATGGAACGTCGTCGA-CATACCACTACTTGTTGATTTACCGATCG 297
Query 298 GGCCAAATTAATGACGTTGTTATAGGCCCATTAAAGCCCAACACAGTTTACTATTACAAA 357
|||||||||||||| || |||||||||||||||||||| || || |||||||||||||||
Sbjct 298 GGCCAAATTAATGATGTGGTTATAGGCCCATTAAAGCCTAATACTGTTTACTATTACAAA 357
Query 358 TGTGGAGGCCCAAGTTCAACTCAAGAGTTCAGTTTCAGGACTCCTCCCTCTAAATTCCCA 417
||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 358 TGTGGAGGCCCAAATTCAACCCAAGAGTTCAGCTTCAGGACTCCTCCCTCTGAATTCCCA 417
Query 418 ATCAAATTCGCCGTGTCCGGTGACCTTGGTACATCTGAATGGAGTAAATCAACATTGGAA 477
|||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 418 ATCAAATTTGCCGTGTCCGGTGACCTTGGGACATCTGAATGGACTAAATCAACATTGGAA 477
Query 478 CATGTATCAAAATGGGATTATGATGTTTTCATCTTGCCTGGTGATCTGTCATACGCTAAC 537
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CATGTATCAAAATGGGATCATGATGTTTTCATCTTGCCTGGTGATCTGTCATACGCTAAC 537
Query 538 AT-GTACCAACCACTGTGGGACACTTTTGGTCGCTTGGTGCAGCCACTTGCGAGCCAAAG 596
| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 -TCGTACCAACCGTTGTGGGACACTTTTGGTCGCTTGGTGCAGCCACTTGCGAGCAAAAG 596
Query 597 ACCTTGGATGGTCACTCATGGCAACCACGAGCTCGAAAAAATACCTATCTTACA-CAGTA 655
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 597 ACCTTGGATGGTCACTCATGGCAACCACGAGCTCGAGAAAATACCTATCTTACACCA-TC 655
Query 656 AC-CCATTCACCGCCTATAACAAGAGGTGGCGCATGCCATTTGAAGAGAGTGGCTCGAGC 714
|| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 656 ACACC-TTCACCGCCTATAACCAGAGGTGGCGCATGCCATTTGAAGAGAGTGGCTCGACC 714
Query 715 TCGAATTTGTACTATTCTTTCAACGTTTATGGAGTCCACATTATAATGTTGGGGTCATAC 774
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 TCAAATTTGTACTATTCCTTCAACGTTTATGGAGTCCACATTATTATGTTGGGGTCATAC 774
Query 775 ACAGATTTTGAGCCTGGCTCGGAGCAGTACCAATGGTTAGAAAATAATCTCAAGAAAATC 834
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 775 ACAGATTTCGAGCCTGGCTCGGAGCAATACCAATGGTTAGAAAATAATCTCAAAAAAATC 834
Query 835 GACCGTAAGACCACACCGTGGGTTGTGGCTGTGGTGCATGCGCCTTGGTACAACTCCAAC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GACCGTAAGACCACACCGTGGGTTGTGGCTGTGGTGCATGCGCCTTGGTACAACTCCAAC 894
Query 895 GAAGCTCACCAAGGAGAGAAAGAGAGTGTGGAGATGAAAGAATCCATGGAAACTCTTCTT 954
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 895 GAAGCCCACCAAGGAGAGAAAGAGAGTGTGAAGATGAAAGAATCCATGGAAACTCTTCTT 954
Query 955 TACAAAGCTCGTGTCGATTTGGTTTTTGCAGGTCACGTTCATGCTTACGAGCGTTTTAGT 1014
|| ||||| || ||||||||||| ||||| |||||||| || ||||||||||||||||||
Sbjct 955 TATAAAGCACGCGTCGATTTGGTATTTGCCGGTCACGTCCACGCTTACGAGCGTTTTAGT 1014
Query 1015 CGAGTGTACCAAGATAAGTTCGACAAATGTGGTCCGGTTTATATTAACATCGGAGATGGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CGAGTGTACCAAGATAAGTTCGACAAATGTGGTCCGGTTTATATTAACATCGGAGATGGT 1074
Query 1075 GGGAATCTAGAAGGCCTTGCTACCAAGTATAGAGATCCAAATCCCGAAATATCATTGTTT 1134
|| ||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||
Sbjct 1075 GGCAATCTAGAAGGCCTTGCTAGAAAGTATAAAGATCCAAATCACGAAATATCAATGTTT 1134
Query 1135 AGAGAAGCAAGTTTCGGGCATGGTCAATTGGTGGTCGAGAATGCGACTCATGCACGTTGG 1194
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1135 AGAGAAGCAAATTTCGGGCATGGTCAATTGGTGGTCGAGAATGCTACTCATGCACATTGG 1194
Query 1195 GAATGGCACAGGAACGACGATGATGTGTCGGTTGAAAAGGATTCGGTTTGGTTAACCAGT 1254
|||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1195 GAATGGCAGAGGAACGACGATGAAGTGTCGGTACAAAAGGATTCGGTTTGGCTAACCAGT 1254
Query 1255 CTCTTAGCCGATTCATCTTGTAAGATTTAG 1284
||||||||||||||||||||||||||||||
Sbjct 1255 CTCTTAGCCGATTCATCTTGTAAGATTTAG 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5