BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52790.1 Length=488 Score E Sequences producing significant alignments: (Bits) Value Ahg485651 jgi|Araly1|485651|fgenesh2_kg.5__1643__AT3G52790.1 573 4e-163 > Ahg485651 jgi|Araly1|485651|fgenesh2_kg.5__1643__AT3G52790.1 Length=358 Score = 573 bits (310), Expect = 4e-163 Identities = 342/358 (96%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 10 ATATAATTCAGAATGGGAAAGAGTTCTTCCATGGCAGTAGCGGAGAAGATCTCTTGGTAC 69 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATATAATTCAGAATGGGTAAGAGTTCTTCCATGGCAGTAGCAGAGAAGATCTCTTGGTAC 60 Query 70 TGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCACAGGAGGGT 129 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCAGAGGAGGGT 120 Query 130 TCCACGGAGATCGTGGAGAAACAACAGCCGTCAATGATGATCACCGGATATTCTCATCGA 189 |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 121 TCCACGGAGATCGTAGAGCAACAACAGCCGTCGATGATGATCACCGGATATTCTGATCGA 180 Query 190 CGGCCAGCATGCGATGAGATATATGAAGTGAAAGAAGGAGAGACGTTGCAAACGATAAGT 249 ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CGGCCAGCATGTGATGAGATTTATGAAGTGAAAGAAGGAGAGACGTTGCAGACGATAAGT 240 Query 250 GAAAAGTGTGGAGATCCTTACATAGTTGAAGGGAATCCTCATATACATGACCACGATGAT 309 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GAGAAGTGTGGAGATCCTTACATTGTTGAAGGGAATCCTCATATACATGACCACGATGAT 300 Query 310 CTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCACTCTAATCTCAAGTGATAATGT 367 ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| Sbjct 301 CTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCTTTTTAATCTCAAGTGATTATGT 358 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17704193296 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5