BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52790.1

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485651 jgi|Araly1|485651|fgenesh2_kg.5__1643__AT3G52790.1         573    4e-163


> Ahg485651 jgi|Araly1|485651|fgenesh2_kg.5__1643__AT3G52790.1
Length=358

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 342/358 (96%), Gaps = 0/358 (0%)
 Strand=Plus/Plus

Query  10   ATATAATTCAGAATGGGAAAGAGTTCTTCCATGGCAGTAGCGGAGAAGATCTCTTGGTAC  69
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATATAATTCAGAATGGGTAAGAGTTCTTCCATGGCAGTAGCAGAGAAGATCTCTTGGTAC  60

Query  70   TGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCACAGGAGGGT  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  61   TGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCAGAGGAGGGT  120

Query  130  TCCACGGAGATCGTGGAGAAACAACAGCCGTCAATGATGATCACCGGATATTCTCATCGA  189
            |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct  121  TCCACGGAGATCGTAGAGCAACAACAGCCGTCGATGATGATCACCGGATATTCTGATCGA  180

Query  190  CGGCCAGCATGCGATGAGATATATGAAGTGAAAGAAGGAGAGACGTTGCAAACGATAAGT  249
            ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  181  CGGCCAGCATGTGATGAGATTTATGAAGTGAAAGAAGGAGAGACGTTGCAGACGATAAGT  240

Query  250  GAAAAGTGTGGAGATCCTTACATAGTTGAAGGGAATCCTCATATACATGACCACGATGAT  309
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGAAGTGTGGAGATCCTTACATTGTTGAAGGGAATCCTCATATACATGACCACGATGAT  300

Query  310  CTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCACTCTAATCTCAAGTGATAATGT  367
            |||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||
Sbjct  301  CTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCTTTTTAATCTCAAGTGATTATGT  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17704193296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5