BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52810.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485653 jgi|Araly1|485653|fgenesh2_kg.5__1645__AT3G52810.1 2226 0.0
Ahg485654 jgi|Araly1|485654|fgenesh2_kg.5__1646__AT3G52820.1 876 0.0
> Ahg485653 jgi|Araly1|485653|fgenesh2_kg.5__1645__AT3G52810.1
Length=1464
Score = 2226 bits (1205), Expect = 0.0
Identities = 1363/1438 (95%), Gaps = 16/1438 (1%)
Strand=Plus/Plus
Query 70 TTCACCGACATCAACTCTTTGAAAATGAAGAAGATGAAAATATTTGGTTTCTTAATTAGC 129
|||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 1 TTCACCAACATCAACTCTTTGAAAATGAAGATGATGAAAATCTTTGGTCTCTTAATTAGC 60
Query 130 TTTTCTCTCTTTTTCCTCTCTCCGTTTGTATGTCAAGCTAACTATGATTCAAACTTCACC 189
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTTTCTCTCCTTTTGCTCTCTCCGTTTGTATGTCAAGCTAACTATGATTCGAACTTCACC 120
Query 190 CGCCCGCCGCCTCGTCCTCTCTTCATTGTCTCTCACGGGCGTCCAAAGTTCTATCCTCAA 249
|||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CGCCCGCCACCTCGTCCCCTCTTCATTGTCTCTCACGGGCGTCCAAAGTTCCATCCTCAA 180
Query 250 CAGGTGCACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACAGACGAC 309
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CAGGTACACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACGGACGAC 240
Query 310 TTGAATGTGGCATCGATGGTGGAGTACGGTAAACATCCAAAAAAGTATGACaaaaaaaCG 369
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 241 ATGCATGTGGCATCGATGGTGGAGTACGGTAAACATCCAAAAAAGTACGACAAGAAAACC 300
Query 370 GCCGGAGAATCCACTTCTTACACATACTTCTTCTACAACTCTGGAAAGATCCATCATGTC 429
||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 301 GCCGGAGAATCTACTTCTTACAGATACTTCTTCTACAACTCTGGCAAGATCCACCATGTC 360
Query 430 AAGATTGGTCCTCTTAAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGTGAC 489
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGATTGGTCCTCTTCAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGTGAC 420
Query 490 GAATTTTCTTTCAAAACTCCC-CCATCCAAATTTCCAATCGAATTCGCCGTCGCTGGTGA 548
||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 421 GAATTTTCTTTCAAAAC-CCCTCCATCCAAATTTCCGATCGAATTTGCCGTCGCTGGTGA 479
Query 549 CCTAGGCCAAACCGATTGGACCGTAAGAACATTAGATCAGAT-ACGGAAACGGGACTTCG 607
||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||
Sbjct 480 CCTAGGCCAAACCGATTGGACATTAAGCACATTAGATCAGATGA-TGAAACGGGACTTCG 538
Query 608 ATGTCTTCCTCCTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCCACTTTGGGACT 667
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGTTTTCCTACTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCCACTTTGGGACT 598
Query 668 CCTTTGGCCGCCTCTTAGAGACTTTAGCTAGCACCCGCCCGTGGATGGTCACGGAGGGGA 727
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 CCTTTGGCCGCCTCTTAGAGACTTTGGCTAGCACCCGCCCGTGGATGGTCACGGAGGGGA 658
Query 728 ACCACGAGATCGAGTCTTTCCCAACCAATGACCACATAAGCTTCAAGTCATACAATGCGC 787
|||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||
Sbjct 659 ACCACGAGATCGAGTCTTTCCCGATCAATGACCACATAAGCTTCACGTCCTACAATGCGC 718
Query 788 GATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTTACTATTCTTTTGATG 847
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 GATGGCTCATGCCTCACGCTGAGAGCCTCTCTCACTCCAATCTTTACTATTCTTTTGATG 778
Query 848 TAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCTATGAGTCCCACTCCGATC 907
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 TAGCAGGCGTCCACACGGTTATGCTTGGTTCTTACACCCCCTATGACTCCCACTCCGATC 838
Query 908 AGTATCATTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAAAGACGCCATGGTTGG 967
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTATCAGTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAAAGACGCCATGGTTGG 898
Query 968 TGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAAGGAGAGA 1027
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGTGGTGATGCACATGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAAGGAGAGA 958
Query 1028 AAATGAGAAGTGCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGTTTTTGCCG 1087
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAATGAGAAATGCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGTTTTTGCCG 1018
Query 1088 GCCACGTTCATACCTACGAACGTTTCAAGCCGATATACAACAAGAAAGCCGATCCATGTG 1147
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1019 GCCACGTTCATACCTACGAACGTTTCAAGCCGATATACAACAAGAAGGCCGACCCATGTG 1078
Query 1148 GACCAATGTACATAACCATTGGTGACGGTGGCAACCGAGAAGGCCTTGCTTTACGGTTCA 1207
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GACCAATGTACATAACCATCGGTGACGGTGGCAACCGAGAAGGCCTTGCTTTACGGTTCA 1138
Query 1208 AAAAGCCTCAGTCACCTTTGTCGGAATTCCGTGAATCGAGTTTTGGACATGGGAGATTAA 1267
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1139 AAAAGCCTCAGTCACCTTTGTCGGTATTCCGTGAATCGAGTTTTGGGCATGGGAGATTAA 1198
Query 1268 GGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAACGACGAGATGTCAT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 GGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAACGACGCGATGTCAT 1258
Query 1328 CTATTGCCGATGAAGTATCGTTCGAAAGCCCTAGAACATCATCGCATTGTCATTCAAATC 1387
|||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 1259 TTATTGCCGATGAAGTATCTTTCGAAAGCCCTAGAGCATCATCACATTGTCGTTCAAATC 1318
Query 1388 GTTATAGAGGTGAGATCTAAATCACCGTATCATAAAACATTTAAGCTCTTGTTATCTAAT 1447
||| |||||||||||||||| ||||| || || |||| || || | || ||| ||
Sbjct 1319 GTTTTAGAGGTGAGATCTAATTCACC--AT-AT----CATT-AA--TCAT-TT-TCTTAT 1366
Query 1448 GTTTTGTAGaaaaataactcaaaaagtaaatttatataaatcttttagttacttaata 1505
|||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 1367 GTTTTGTAGAAAAATAACTCAAAAGGTAAATTTATATAAATCTTTTAATTAATTAATA 1424
> Ahg485654 jgi|Araly1|485654|fgenesh2_kg.5__1646__AT3G52820.1
Length=1408
Score = 876 bits (474), Expect = 0.0
Identities = 1089/1380 (79%), Gaps = 66/1380 (5%)
Strand=Plus/Plus
Query 83 ACTCTTTGAAAATGAAGAAGATGAAAATAT-TTGG--T-TTCTTAATTAGCTTTT-CTCT 137
||||||| ||| ||||| |||||| | | |||| | ||||| |||| |||| ||||
Sbjct 8 ACTCTTT--AAA-CAAGAAAATGAAACT-TCTTGGTCTCTTCTTTCTTAG-TTTTACTCT 62
Query 138 CTTTTTCCTCTCTCCGTTTGTATGTCAAGCTAACTATGAT-TC-AAACTTCACCCGCCCG 195
||| ||||| | |||||| ||| |||||| | ||| | | ||| | | |||| |
Sbjct 63 CTTGTTCCTTTGTCCGTTCATATCTCAAGC---CGATG-TACCTGAACGT-AGCCGCGAG 117
Query 196 CCGCCTCGTCCTC-TCTTCATT-GTCTC-TCACGGGCG-TCCAAAGTTCTATCCTCAACA 251
||||||||||| | || || || ||| | | | | || |||||| | | |||| |||||
Sbjct 118 CCGCCTCGTCC-CATCGTC-TTCGTC-CATAATGACCGCTCCAAA-TCCGATCCGCAACA 173
Query 252 GGTGCACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACAGACGACTT 311
|||||| |||||||||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 174 GGTGCATGTATCATTGGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAA 233
Query 312 GAATGTGGCA-TCGATGGTGGAGTACGGTAAACATCCAAAAAAGTATGACaaaaaaaCGG 370
|| |||| | ||| ||||||| ||||||||||| ||| ||| || || |||| |
Sbjct 234 CAAGGTGG-AGTCGGTGGTGGAATACGGTAAACAACCAGGAAACTACGATGGAAAAGCCA 292
Query 371 CCGGAGAATCCACTTCTTACACATAC-TTCTTCTACAACTCTGGAAAGATCCATCATGTC 429
||||||||| ||||||||||| |||| || |||||||| || ||||| ||||| || |||
Sbjct 293 CCGGAGAATGCACTTCTTACAAATACATT-TTCTACAAATCCGGAAAAATCCACCACGTC 351
Query 430 AAGATTGGTCCTCTTAAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGTGAC 489
|||||||| ||||| |||||||||||| ||||| ||||||||||| || |||| |
Sbjct 352 AAGATTGGACCTCTCCAACCCAACACCACTTACTACTACCGTTGTGGCGGAAACGG-CCC 410
Query 490 -GAATTTTCTTTCAAAACTCCC-CCATCCAA-ATTTCCAATCGAATTCGCCGTCGCT-GG 545
|||||||||||||| || ||| || | ||| ||||| |||| ||||| ||| | ||
Sbjct 411 TGAATTTTCTTTCAAGAC-CCCTCCGT-CAACTTTTCCGGTCGAGTTCGCAATCG-TAGG 467
Query 546 TGACCTAGGCCAAACCGATTGGACCGTAAG-AACATTAGATCAGATACGGAAACGGGACT 604
||||||||||||||||| ||||| | || ||||||| |||| || || | ||||
Sbjct 468 CGACCTAGGCCAAACCGAATGGACAG-CAGCAACATTATCTCAGGTAAAGAGTCAAGACT 526
Query 605 TCGATGTCTTCCTCCTTCCCGGTGACCTCTCCTACGCAGACACCCA-CCAGCCACTTTGG 663
||| ||||| || ||||| || ||||||||||| || |||| | | |||||||||||||
Sbjct 527 ACGACGTCTTTCTACTTCCTGGCGACCTCTCCTATGCTGACA-CTAGCCAGCCACTTTGG 585
Query 664 GACTCCTTTGGCCGCCTCTTAGAGACTTTAGCTAG-CACCCGCCCGTGGATGGTCACGGA 722
||||||||||| ||||| | ||| | | || || || || || |||||||| || ||
Sbjct 586 GACTCCTTTGGTCGCCTGGTGGAGCCACTCGCGAGCCA-GCGTCCTTGGATGGTTACTGA 644
Query 723 GGGGAACCACGAGATCGAG-TCTTTCCCAACCAATGACCACATAAGCTTCAAGTCATACA 781
|| ||||||||||||||| || ||||||| | ||| |||| || ||||||||||||||
Sbjct 645 AGGAAACCACGAGATCGAGTTC-TTCCCAATCTTTGAACACACAACCTTCAAGTCATACA 703
Query 782 ATGCGCGATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTTACTATTCTT 841
|||| || ||||||||||||||| | ||||| |||||| ||||||| || ||||| ||||
Sbjct 704 ATGCCCGGTGGCTCATGCCTCACACCGAGAGCCTCTCTGACTCCAACCTGTACTACTCTT 763
Query 842 TTGATGTAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCTATGAGTCCCACT 901
|||| ||||| || |||||||||||||||||||||||||||||| || ||| || | |
Sbjct 764 TTGACGTAGCCGGTGTCCACACCGTTATGCTTGGTTCTTACACCGACTTTGATTCTGATT 823
Query 902 CCGATCAGTATCATTGGCTCCAAGCTGATTTAAG-AAAGGTTGACCGTAAAAAGACGCCA 960
| ||||||||||| |||||||| || ||| || | ||||||||||||||||| ||||||
Sbjct 824 CTGATCAGTATCAATGGCTCCAGGCCGATCTA-GCAAAGGTTGACCGTAAAACGACGCCG 882
Query 961 TGGTTGGTGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAA 1020
||| |||||||| || |||| | || ||||||| || || |||| ||| | || |||
Sbjct 883 TGGGTGGTGGTGTTGCTGCATGCTCCGTGGTACAACACGAATGAGGCACATGAAGGCGAA 942
Query 1021 GGAGAGAAAATGAGAAGT-GCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGT 1079
||||||| ||||| || || ||||| |||||||| | |||||| ||| ||||||||
Sbjct 943 GGAGAGAGCATGAGG-GTAGCTATGGAGTCTTTGCTCTTTAGTGCTCGAGTCGACGTCGT 1001
Query 1080 -TTTTGCCGGCCACGTTCATACCTACGAACGTTTCAAGCC-GATATACAACAAGAAAGCC 1137
|||| ||||||| |||||| |||||||||||||||| | | |||| ||||| || |||
Sbjct 1002 CTTTT-CCGGCCATGTTCATGCCTACGAACGTTTCAAACGTG-TATATAACAACAAGGCC 1059
Query 1138 GATCCATGTGGACCAATGTACATAACCATTGGTGACGGTGGCAACCGAGAAGGCCTTGCT 1197
|| |||||||| || || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1060 GACCCATGTGGGCCTATATACATTACCATCGGTGACGGAGGCAACCGAGAAGGCCTTGCT 1119
Query 1198 TTA-CGGTTCAAAAAGCCTCAGTCACCTTTGTCGGAAT-TCCGTGAATCGAGTTTTGGAC 1255
||| || ||||| ||||||| |||||||| ||||||| || | ||||||||||||||||
Sbjct 1120 TTATCG-TTCAAGAAGCCTCCTTCACCTTTATCGGAATATC-GCGAATCGAGTTTTGGAC 1177
Query 1256 ATGGGAGATT-AAGGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAAC 1314
|||| ||||| |||| |||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 1178 ATGGAAGATTGAAGG-TTATGGACGGGAAACGAGCACATTGGTCATGGCATAGAAACAAT 1236
Query 1315 GACGAGATGTCATCTA-TTGCCGATGAAGTATCG-TTCGAAAGCCCTAGAACATCATCG- 1371
||| || ||| || |||| |||||||| | | || || || | ||| |||||||||
Sbjct 1237 GACTCGAACTCA-CTTCTTGCTGATGAAGTCTGGCTT-GAGAGTCTTAGCACATCATCGT 1294
Query 1372 CAT-T-GTCATTCAAATCGTTATAGAGGTGAGATCTAAATCACCGTATCATAAAACATTT 1429
||| | | | ||| | ||||| || | |||| ||||||||| | || || ||||| |||
Sbjct 1295 CATGTTGGCCTTCGAGTCGTTCCAGTGATGAGCTCTAAATCATCATACCAAAAAACGTTT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5