BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52820.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485654 jgi|Araly1|485654|fgenesh2_kg.5__1646__AT3G52820.1 2087 0.0
> Ahg485654 jgi|Araly1|485654|fgenesh2_kg.5__1646__AT3G52820.1
Length=1408
Score = 2087 bits (1130), Expect = 0.0
Identities = 1319/1411 (93%), Gaps = 9/1411 (1%)
Strand=Plus/Plus
Query 16 AACTTTTACTCTTTAAACAAGAAGATGAAACTTTTTGG--TC-TCTTTCTTAGTTTTACT 72
||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||
Sbjct 1 AACTTTTACTCTTTAAACAAGAAAATGAAACTTCTTGGTCTCTTCTTTCTTAGTTTTACT 60
Query 73 CTCTTGTTTCTTTGTCCGTTCATATCTCAAGCCGATGTGCCGGAACTTAGCCGCCAGCCG 132
|||||||| ||||||||||||||||||||||||||||| || |||| ||||||| |||||
Sbjct 61 CTCTTGTTCCTTTGTCCGTTCATATCTCAAGCCGATGTACCTGAACGTAGCCGCGAGCCG 120
Query 133 CCTCGTCCCATCGTATTCGTCCATAATGACCGCTCCAAATCCGATCCGCAACAGGTGCAC 192
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCGTCCCATCGTCTTCGTCCATAATGACCGCTCCAAATCCGATCCGCAACAGGTGCAT 180
Query 193 ATATCGTTAGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAACAAGGTG 252
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTATCATTGGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAACAAGGTG 240
Query 253 GAGTCGGTAGTGGAATACGGTAAACAACCAGGAAAGTACGACGGAAAAGCCACCGGAGAA 312
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 241 GAGTCGGTGGTGGAATACGGTAAACAACCAGGAAACTACGATGGAAAAGCCACCGGAGAA 300
Query 313 TGCACTTCTTACAAATAC-TTCTTCTACAAATCCGGCAAAATCCACCATGTCAAGATCGG 371
|||||||||||||||||| || |||||||||||||| ||||||||||| |||||||| ||
Sbjct 301 TGCACTTCTTACAAATACATT-TTCTACAAATCCGGAAAAATCCACCACGTCAAGATTGG 359
Query 372 ACCTCTCCAAGCCAACACCACTTACTACTACCGTTGTGGCGGCAACGGCCCTGAATTTTC 431
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 ACCTCTCCAACCCAACACCACTTACTACTACCGTTGTGGCGGAAACGGCCCTGAATTTTC 419
Query 432 TTTCAAGACCCCTCCATCAACTTTTCCTGTCGAGTTCGCAATCGTAGGCGACCTAGGCCA 491
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TTTCAAGACCCCTCCGTCAACTTTTCCGGTCGAGTTCGCAATCGTAGGCGACCTAGGCCA 479
Query 492 AACCGAATGGACAGCAGCAACGTTATCTCATATAAATAGCCAAGACTACGACGTGTTTCT 551
||||||||||||||||||||| |||||||| |||| || |||||||||||||| |||||
Sbjct 480 AACCGAATGGACAGCAGCAACATTATCTCAGGTAAAGAGTCAAGACTACGACGTCTTTCT 539
Query 552 ACTTCCTGGAGACCTATCCTACGCCGACACTCA-CCAGCCACTCTGGGACTCCTTTGGTC 610
||||||||| ||||| ||||| || |||||| | ||||||||| ||||||||||||||||
Sbjct 540 ACTTCCTGGCGACCTCTCCTATGCTGACACT-AGCCAGCCACTTTGGGACTCCTTTGGTC 598
Query 611 GCCTAGTGGAGCCACTAGCGAGCAAGCGTCCTTGGATGGTTACTGAAGGAAACCACGAAA 670
|||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 599 GCCTGGTGGAGCCACTCGCGAGCCAGCGTCCTTGGATGGTTACTGAAGGAAACCACGAGA 658
Query 671 TCGAATTCTTCCCAATCATTGAACACACAACCTTCAAGTCATACAATGCTCGGTGGCTCA 730
|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 TCGAGTTCTTCCCAATCTTTGAACACACAACCTTCAAGTCATACAATGCCCGGTGGCTCA 718
Query 731 TGCCTCACACCGAGAGCTTCTCT-ACCTCCAACCTGTACTACTCTTTTGACGTAGCCGGT 789
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 719 TGCCTCACACCGAGAGCCTCTCTGA-CTCCAACCTGTACTACTCTTTTGACGTAGCCGGT 777
Query 790 GTCCACACTGTTATGCTTGGTTCTTACACCGACTTTGACTGTGAATCCGATCAGTATCAA 849
|||||||| ||||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct 778 GTCCACACCGTTATGCTTGGTTCTTACACCGACTTTGATTCTGATTCTGATCAGTATCAA 837
Query 850 TGGCTCCAGGCCGATCTAGCAAAGGTTGACCGTAAAACGACGCCGTGGGTGGTGGTGTTG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGGCTCCAGGCCGATCTAGCAAAGGTTGACCGTAAAACGACGCCGTGGGTGGTGGTGTTG 897
Query 910 CTGCACGCCCCGTGGTACAACACAAACGAGGCACATGAAGGTGAAGGAGAGAGCATGAGG 969
||||| || |||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 898 CTGCATGCTCCGTGGTACAACACGAATGAGGCACATGAAGGCGAAGGAGAGAGCATGAGG 957
Query 970 GAAGCTATGGAGTCTCTGCTCTTTAATGCTCGAGTCGACGTCGTCTTTTCTGGCCATGTT 1029
| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 958 GTAGCTATGGAGTCTTTGCTCTTTAGTGCTCGAGTCGACGTCGTCTTTTCCGGCCATGTT 1017
Query 1030 CATGCCTACGAACGTTTCAAACGTGTATATAACAACAAGGCCGACCCCTGTGGGCCTATA 1089
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 CATGCCTACGAACGTTTCAAACGTGTATATAACAACAAGGCCGACCCATGTGGGCCTATA 1077
Query 1090 CACATTACCATCGGTGACGGCGGTAACCGAGAGGGCCTTGCTTTATCATTCAAGAAGCCT 1149
||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 1078 TACATTACCATCGGTGACGGAGGCAACCGAGAAGGCCTTGCTTTATCGTTCAAGAAGCCT 1137
Query 1150 CCTTCACCTTTATCGGAATTTCGCGAATCGAGTTTTGGACATGGGAGATTGAAGGTTATG 1209
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 CCTTCACCTTTATCGGAATATCGCGAATCGAGTTTTGGACATGGAAGATTGAAGGTTATG 1197
Query 1210 GACGGGAAACGAGCACATTGGTCATGGCATAGAAACAATGACTCGAACTCACTTCTTGCT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GACGGGAAACGAGCACATTGGTCATGGCATAGAAACAATGACTCGAACTCACTTCTTGCT 1257
Query 1270 GATGAGGTCTGGCTTGATAGTCTTAGCACATCATCATCATGTTGGCCTTCAAGTCGCTCC 1329
||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1258 GATGAAGTCTGGCTTGAGAGTCTTAGCACATCATCGTCATGTTGGCCTTCGAGTCGTTCC 1317
Query 1330 AATGATGAGCTCTAGATCATCATACCCGAAAATGTCTTGTACTTCTTTTGCTCATCGGAG 1389
| |||||||||||| ||||||||||| |||| || || ||||| |||| |||| |||
Sbjct 1318 AGTGATGAGCTCTAAATCATCATACCAAAAAACGTTTTATACTTATTTTATTCATTGGAT 1377
Query 1390 CGCTCGTAGAATAGTAAGGAACTACGAATAT 1420
|||| ||||||||| |||||||||| |||||
Sbjct 1378 CGCTGGTAGAATAGCAAGGAACTACAAATAT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5