BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52840.1
Length=2517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485655 jgi|Araly1|485655|fgenesh2_kg.5__1647__AT3G52840.1 3888 0.0
Ahg492198 jgi|Araly1|492198|fgenesh2_kg.7__1631__AT4G26140.1 2063 0.0
Ahg917381 jgi|Araly1|917381|Al_scaffold_0008_2132 1613 0.0
> Ahg485655 jgi|Araly1|485655|fgenesh2_kg.5__1647__AT3G52840.1
Length=2417
Score = 3888 bits (2105), Expect = 0.0
Identities = 2318/2421 (96%), Gaps = 14/2421 (1%)
Strand=Plus/Plus
Query 3 TATGTACATATAGCTTCTAGATTCTCATTCATTCCAATCACAGAGCTGATAATTTCAGCA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATGTACATATAGCTTCTAGATTCTCATTCATTCCAATCACAGAGCTGATAATTTCAGCA 60
Query 63 GAA---TATTTACTATTTTTTATAAAGAAACaaaaaaaCATAGAAAGGTTTG-GTT-TTT 117
||| | ||||| | |||| | ||||||||||||| ||| ||||| | ||| ||| |||
Sbjct 61 GAATCTTTTTTACCAGTTTTAAAAAAGAAACAAAAAGACAGAGAAAAG-TTGAGTTATTT 119
Query 118 CAAAGAACGTGAAAATGAGTATGCATTTTAGGA-ATAAAGCATGGATTATTCTGGCAATT 176
|||||| | ||||||| || ||||||||| || |||||||||||||| |||| ||||||
Sbjct 120 -AAAGAAGGGGAAAATGGGTGTGCATTTTA-GAGATAAAGCATGGATTTTTCTAGCAATT 177
Query 177 CTGTGTTTTTCATCTTTGATTCACTCAACAGAAGCAGTGGTCACTTATGATCACAAAGCT 236
||||||||||||| |||||| || || ||||||||||||||||||||||| ||||||
Sbjct 178 TTGTGTTTTTCATCGTTGATTTGGTCGACTGAAGCAGTGGTCACTTATGATCATAAAGCT 237
Query 237 TTAATCATCAATGGACAGAGAAGGATCCTTATCTCCGGTTCTATACACTATCCAAGAAGC 296
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 TTAATCATCAATGGACAGAGAAGGATCCTTATCTCCGGTTCTATTCACTATCCAAGAAGC 297
Query 297 ACTCCTGAGATGTGGCCTGATCTTATAAAGAAGGCCAAAGAAGGAGGTTTGGATGTTATA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTCCTGAGATGTGGCCTGATCTTATAAAGAAGGCCAAAGAAGGAGGTTTGGATGTTATA 357
Query 357 CAAACATATGTTTTCTGGAATGGACATGAACCTTCTCCTGGAAATTACTATTTTCAGGAT 416
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 CAAACTTATGTTTTCTGGAATGGACATGAACCTTCTCCTGGAAATTATTATTTTCAGGAT 417
Query 417 AGATATGATCTGGTTAAATTCACCAAACTGGTGCACCAAGCTGGACTATATCTTGATCTA 476
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 418 AGATATGATCTGGTTAAATTCACCAAGCTGGTGCATCAAGCTGGTCTATATCTTGATCTA 477
Query 477 AGAATTGGTCCATATGTTTGTGCCGAGTGGAATTTTGGGGGATTTCCGGTTTGGCTCAAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAATTGGTCCATATGTTTGTGCCGAGTGGAATTTTGGGGGATTTCCGGTTTGGCTCAAA 537
Query 537 TATGTTCCTGGTATGGTTTTCAGAACAGATAACGAACCTTTCAAGATTGCAATGCAAAAA 596
|||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 538 TATGTTCCTGGTATTGTTTTCAGAACAAATAATGAACCTTTCAAGATTGCAATGCAAAGA 597
Query 597 TTCACAAAGAAGATTGTGGATATGATGAAAGAAGAAAAGCTGTTTGAGACTCAAGGAGGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCACAAAGAAGATTGTGGATATGATGAAAGAAGAAAAGCTGTTTGAGACTCAAGGAGGA 657
Query 657 CCCATCATTCTCTCACAGATAGAGAATGAGTATGGACCAATGCAATGGGAGATGGGAGCA 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 CCCATCATTCTCTCACAGATAGAGAATGAGTATGGACCAATGGAATGGGAGATGGGAGCA 717
Query 717 GCAGGAAAGGCTTACTCAAAATGGACAGCTGAAATGGCATTGGGACTGTCCACAGGTGTC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GCAGGAAAGGCTTACTCAAAATGGACAGCTGAAATGGCATTGGGACTGTCCACAGGTGTC 777
Query 777 CCATGGATTATGTGCAAGCAAGAGGATGCTCCTTACCCTATTATAGACACATGCAATGGA 836
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 778 CCATGGATTATGTGCAAGCAAGAGGATGCTCCTTACCCCATTATAGACACATGCAATGGC 837
Query 837 TTTTATTGTGAGGGTTTCAAACCAAACTCAGACAATAAGCCGAAGTTGTGGACAGAGAAC 896
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 838 TTTTACTGTGAGGGTTTCAAACCAAACTCAGTCAACAAGCCGAAGTTGTGGACAGAGAAC 897
Query 897 TGGACTGGTTGGTTCACGGAATTTGGAGGTGCGATACCAAATAGACCAGTCGAAGACATT 956
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 TGGACTGGTTGGTTCACGGAATTTGGAGGTCCGATACCAAATAGACCAGTCGAAGACATT 957
Query 957 GCGTTCTCCGTGGCTCGTTTCATACAGAACGGTGGTTCTTTTATGAATTATTATATGTAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCGTTCTCCGTGGCTCGTTTCATACAGAACGGTGGTTCTTTTATGAATTATTATATGTAT 1017
Query 1017 TATGGAGGGACCAACTTTGATAGAACAGCCGGTGTTTTCATCGCCACTAGCTATGACTAC 1076
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 TATGGAGGGACCAACTTTGATAGAACAGCCGGTGTTTTCATCGCCACAAGCTATGACTAC 1077
Query 1077 GATGCTCCTATTGACGAATATGGATTACTAAGAGAACCCAAGTATAGTCACTTGAAAGAG 1136
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 GATGCTCCTCTTGACGAATATGGATTACTGAGAGAACCCAAGTATAGTCACTTGAAAGAG 1137
Query 1137 TTACATAAAGTCATCAAGCTATGTGAACCTGCATTGGTCTCTGTTGATCCCACCATCACA 1196
|||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 TTACATAAGGTCATTAAGCTGTGTGAACCTGCATTGGTCTCCGTTGATCCCACCATCACA 1197
Query 1197 TCGCTCGGCGATAAACAAGAAATTCATGTGTTCAAGTCCAAGACTTCTTGCGCTGCATTT 1256
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCGATCGGCGATAAACAAGAAGTTCATGTGTTCAAGTCCAAGACTTCTTGCGCTGCATTT 1257
Query 1257 CTCTCGAACTACGACACGAGTTCTGCAGCAAGAGTTATGTTTAGGGGATTTCCGTATGAT 1316
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1258 CTCTCGAACTACGATACGAGTTCTGCAGCAAGAATTATGTTTAGGGGATTTCCGTATGAT 1317
Query 1317 TTGCCTCCTTGGTCTGTTAGTATTTTACCAGACTGCAAAACCGAATATTACAACACTGCA 1376
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1318 TTGCCTCCTTGGTCTGTCAGTATTTTACCAGACTGCAAAACCGAGTATTACAACACTGCA 1377
Query 1377 AAGATCCGTGCACCAACCATACTTATGAAGATGATTCCTACAAGCAC-AAAGTTTTCCTG 1435
||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||
Sbjct 1378 AAGATCCGTGCACCAACCATACTTATGAAGATGGCTCCTACTAGCACGAAA-TTTTCCTG 1436
Query 1436 GGAATCGTACAACGAAGGAAGCCCTTCTTCAAATGAAGCTGGTACATTTGTTAAAGATGG 1495
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1437 GGAATCGTACAACGAAGGAAGCCCTTCTTCAAATGATGATGGTACATTTGTTAAAGATGG 1496
Query 1496 TCTAGTGGAACAAATAAGCATGACCAGAGATAAAACAGATTATTTCTGGTATTTTACGGA 1555
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1497 TCTTGTGGAACAAATAAGCATGACCAGAGATAAAACAGATTATTTCTGGTATTTAACGGA 1556
Query 1556 CATTACAATTGGTTCTGATGAGAGCTTCTTGAAGACTGGTGATAATCCTCTTCTTACCAT 1615
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1557 CATTACAATTGGTTCTGATGAGAGCTTTTTGAAGACTGGTGATAATCCTCTTCTTACCAT 1616
Query 1616 TTTTTCGGCTGGGCATGCTCTTCATGTATTCGTTAATGGCCTGCTTGCAGGAACTTCCTA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TTTTTCGGCTGGGCATGCTCTTCATGTATTCGTTAATGGCCTGCTTGCAGGAACTTCCTA 1676
Query 1676 TGGAGCACTGAGCAACTCAAAGCTCACATTTAGTCAAAATATCAAATTGAGTGTAGGCAT 1735
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1677 TGGAGCACTGAGCAACTCAAAGCTCACATTTAGTCAAAAGATCAAATTGAGTGTAGGCAT 1736
Query 1736 CAACAAACTTGCTCTGCTTAGTACTGCAGTGGGTCTTCCGAACGCTGGTGTGCATTATGA 1795
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 CAACAAACTTGCTCTGCTAAGTACTGCAGTGGGTCTTCCGAACGCTGGTGTGCATTACGA 1796
Query 1796 GACTTGGAATACTGGTATTCTAGGGCCAGTCACATTGAAGGGAGTAAACTCTGGAACATG 1855
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1797 GACTTGGAATACTGGTGTTCTAGGACCAGTCACATTGAAGGGAGTTAACTCTGGAACATG 1856
Query 1856 GGACATGTCTAAATGGAAGTGGTCTTACAAGATTGGTCTTAGAGGTGAAGCTATGAGCCT 1915
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1857 GGACATGTCTAAATGGAAGTGGTCTTACAAGATTGGTATTAGAGGTGAAGCTATGAGCCT 1916
Query 1916 TCACACCTTAGCTGGAAGTTCAGCTGTGAAATGGTGGATCAAAGGAT--T-CGTGGTCAA 1972
||| ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1917 TCATACCTTAGCTGGAAGTTCAGCTGTGAAATGGTGGATAAAAGGATCATTCGTGGTCAA 1976
Query 1973 GAAGCAACCCTTGACCTGGTACAAGTCTTCTTTTGATACACCGAGAGGCAACGAACCACT 2032
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1977 GAAGGAACCCTTGACCTGGTACAAGTCTTCTTTTGATACACCGAAAGGCAACGAACCACT 2036
Query 2033 GGCTTTGGACATGAACACAATGGGGAAAGGTCAAGTTTGGGTAAATGGACATAACATTGG 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GGCTTTGGACATGAACACAATGGGGAAAGGTCAAGTTTGGGTAAATGGACATAACATTGG 2096
Query 2093 ACGCCACTGGCCTGCCTACACGGCTCGTGGGAACTGTGGACGTTGCAACTATGCTGGAAT 2152
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2097 ACGCCACTGGCCTGCCTACACGGCTCGTGGGAACTGCGGACGCTGCAATTATGCTGGAAT 2156
Query 2153 TTACAACGAGAAGAAATGTCTCAGTCACTGTGGTGAACCTTCTCAAAGATGGTACCATGT 2212
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2157 TTACAACGAGAAGAAATGTCTCAGTCACTGTGGTGAACCTTCACAAAGATGGTACCATGT 2216
Query 2213 ACCTCGTTCATGGCTAAAACCGTTTGGGAACCTTCTAGTTATATTTGAGGAATGGGGTGG 2272
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GCCTCGTTCATGGCTAAAACCATTTGGGAACCTTCTAGTTATATTTGAGGAATGGGGTGG 2276
Query 2273 TGATCCAAGTGGAATCTCTCTTGTTAAAAGGACAGCCAAATGAAGCTTCTTACTTCAAAT 2332
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 2277 TGATCCAAGTGGAATCTCTCTTGTTGAAAGAACAGCCAAATGAAGCTTCTTACTTCGTTT 2336
Query 2333 TTTTTCCGGAAGCATGCAGAGATTGTCATGTACAGATATAGTTGCATTCATTGGCTCATT 2392
|||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2337 TTTTTCTGGAAGCATGCCTAGATTGTCATGTACAGATATAGTTGCATTTATTGGCTCTTT 2396
Query 2393 GTGGAAGaatattatatatat 2413
|||||||||| |||||| |||
Sbjct 2397 GTGGAAGAATGTTATATGTAT 2417
> Ahg492198 jgi|Araly1|492198|fgenesh2_kg.7__1631__AT4G26140.1
Length=2383
Score = 2063 bits (1117), Expect = 0.0
Identities = 1877/2239 (84%), Gaps = 72/2239 (3%)
Strand=Plus/Plus
Query 142 ATTTTAGGAATAAAGCATGGATTA-TTCTGGCAATTCTGTGTTTTTCATCTTTGATTCAC 200
|||| ||| ||||||| |||| || |||||| ||||| || | ||||||||||||| |
Sbjct 85 ATTTCAGGGATAAAGCCTGGA-TACTTCTGGGGATTCTTTGGTGTTCATCTTTGATTTAT 143
Query 201 TCA-ACAGAAGCAGTGGTCACTTATGATCACAAAGCTTTAATCATCAATGGACAGAGAAG 259
||| | ||||| |||||||||| |||| |||||| | ||||||||||| ||||||||
Sbjct 144 TCAGTTA-AAGCAATGGTCACTTACGATCGTAAAGCTGTGATCATCAATGGTCAGAGAAG 202
Query 260 GATCCTTATCTCCGGTTCTATACACTATCCAAGAAGCACTCCTGAGATGTGGCCTGATCT 319
||||||| |||| || || || ||||| ||||||||||| ||||||||||||||||| ||
Sbjct 203 GATCCTTCTCTCTGGCTCCATTCACTACCCAAGAAGCACACCTGAGATGTGGCCTGACCT 262
Query 320 TATA-AAGAAGGCCAAAGAAGGAGGTTTGGATGTTATACAAACATATGTTTTCTGGAATG 378
|||| || ||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 263 TATACAA-AAGGCCAAAGATGGAGGTTTGGATGTTATACAGACTTATGTTTTCTGGAATG 321
Query 379 GACATGAACCTTCTCCTGGA-AATTACTATTTTCAGGATAGATATGATCTGGTTAAATTC 437
| |||||||||||||||||| || || |||||| |||| ||||||||| ||||||| |||
Sbjct 322 GGCATGAACCTTCTCCTGGACAA-TATTATTTTGAGGACAGATATGATTTGGTTAAGTTC 380
Query 438 ACCAAACTGGTGCACCAAGCTGGACTATATC-TTGATCTAAGAATTGGTCCATATGTTTG 496
| ||||||||| || |||||||| || || | || |||| ||||||||||| ||||||||
Sbjct 381 ATCAAACTGGTACAACAAGCTGGTCTTTA-CGTTCATCTCAGAATTGGTCCTTATGTTTG 439
Query 497 TGCCGAGTGGAATTTTGG-GGGATTTCCGGTTTGGCTCAAATATGTTCCTGGTATGGT-T 554
|| || ||||| || || ||| ||||| |||||||||||||||||||| | |||||| |
Sbjct 440 CGCTGAATGGAACTTCGGAGGG-TTTCCTGTTTGGCTCAAATATGTTCCCGATATGGTGT 498
Query 555 TTCAGAACAGATAACGAACCTTTCAAGATTGCAATGCAAAAATTCACAAAGAAGATTGTG 614
|| || || || || |||||||||||| |||||||||||||||||| |||||||||||
Sbjct 499 TT-AGGACCGACAATGAACCTTTCAAGGCTGCAATGCAAAAATTCACTGAGAAGATTGTG 557
Query 615 GATATGATGAAAGAAGAAAAGCTGTTTGAGACTCAAGGAGGACCCATCATTCTCTCACAG 674
| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 558 GGGATGATGAAAGAAGAAAAATTATTTGAGACTCAAGGAGGACCCATCATTCTGTCACAG 617
Query 675 ATAGAGAATGAGTATGGACCAAT-GCAATGGGAGATGGGAGCAGCAGGAAAGGCTTACTC 733
||||||||||||||||||||||| | | |||||||| |||||| |||| ||||| ||| |
Sbjct 618 ATAGAGAATGAGTATGGACCAATAG-AGTGGGAGATAGGAGCACCAGGGAAGGCATACAC 676
Query 734 AAAATGGACAGCTGAAATGGCATTGGGACTGTCCACAGGTGTCCCATGGATTATGTGCAA 793
||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 677 AAAATGGGTAGCTGAAATGGCACAAGGACTCTCCACCGGTGTCCCATGGATTATGTGCAA 736
Query 794 GCAAGAGGATGCTCCTTACCCTATTA-TAGACACATGCAATGGATTTTATTGTGAGGGTT 852
|||||| ||||||||| || |||||| || ||||||||||||| |||||||||||| ||
Sbjct 737 GCAAGATGATGCTCCTAACTCTATTATTA-ACACATGCAATGGGTTTTATTGTGAGAATT 795
Query 853 TCAAACCAAACTCAGACAATAAGCCGAAGTTGTGGACAGAGAACTGGACTGGTTGGTTCA 912
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 796 TCAAACCAAACTCGGACAATAAGCCGAAAATGTGGACAGAGAACTGGACTGGTTGGTTCA 855
Query 913 CGGAATTTGGAGGTGCGATACCAAATAGACCAGTCGAAGACATTGCGTTCTCCGTGGCTC 972
| || |||||||||||| ||||| | ||||||| |||||||||||| || ||||||||||
Sbjct 856 CAGAGTTTGGAGGTGCGGTACCATACAGACCAGCCGAAGACATTGCCTTATCCGTGGCTC 915
Query 973 GTTTCATACAGAACGGTGGTTCTTTTATGAATTATTATATGTATTATGGAGGGACCAACT 1032
| ||||||||||||||||| || || || || || |||||||| ||||||| |||||||
Sbjct 916 GCTTCATACAGAACGGTGGCTCCTTCATCAACTACTATATGTACCATGGAGGAACCAACT 975
Query 1033 TTGATAGAACAGCCGGTGTTTTCATCGCCACTAGCTATGACTACGATGCTCCTATTGACG 1092
| || |||||||| || | ||||||||||| ||||||||||| ||||||||| |||| |
Sbjct 976 TCGACAGAACAGCTGGCGAATTCATCGCCACCAGCTATGACTATGATGCTCCTCTTGATG 1035
Query 1093 AATATGGATTACTAAGAGAACCCAAGTATAGTCACTTG-AAAGAGTTACATAAAGTCATC 1151
||||||| || | |||||||| ||||||||||||||| |||| | | ||||| ||||||
Sbjct 1036 AATATGGGTTGCCGAGAGAACCTAAGTATAGTCACTTGAAAAG-GCTGCATAAGGTCATC 1094
Query 1152 AAGCTATGTGAACCTGCATTGGTCTCTGTTGATCCCACCATCACATCGCTCGGCGATAAA 1211
||||| |||||||| ||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 1095 AAGCTCTGTGAACCGGCATTGGTCTCTGCTGATCCTACGGTCACATCGCTCGGCGATAAA 1154
Query 1212 CAAGAAATTCATGTGTTCAAGTC-CAAGACTTCTTGCGCTGCATTTCTCTCGAACTACGA 1270
|||||| ||||||||||||||| | || | ||||||||||| |||||||| || ||| |
Sbjct 1155 CAAGAAGCTCATGTGTTCAAGTCTC-AGTCATCTTGCGCTGCTTTTCTCTCAAATTACAA 1213
Query 1271 CACGAGTTCTGCAGCAAGAGTTAT-GTTTAGG-GGATTTCCGTATGATTTGCCTCCTTGG 1328
||| |||||||| ||||||| | | |||| || |||| | | |||||| |||||||||||
Sbjct 1214 CACTAGTTCTGCTGCAAGAG-TCTCGTTT-GGCGGATCTACATATGATCTGCCTCCTTGG 1271
Query 1329 TCTGTTAGTATTTTACCAGACTGCAAAACCGAATATTACAACACTGCAAA-G---A--TC 1382
||||| |||||| |||| ||||||||||| || ||||||||||||||||| | | ||
Sbjct 1272 TCTGTCAGTATTCTACCCGACTGCAAAACTGAGTATTACAACACTGCAAAGGTACAGGTC 1331
Query 1383 CGTGCACCAACCATACTTATGAAGATGATTCCTACAAGCACA-AAGTTTTCCTGGGAATC 1441
||| || ||| ||||| ||||||||| ||||||||| |||| | || || |||| |||
Sbjct 1332 CGTACATCAAGCATACACATGAAGATGGTTCCTACAAACACACCA-TTCTCTTGGGGATC 1390
Query 1442 GTACAACGAAGGA-AGCCCTTCTTCAAATGA-AGCTGGTACATTTGTTA-AAGATGGTCT 1498
||||||||| || | |||||| |||| || | |||||| ||| | | ||||||| ||
Sbjct 1391 ATACAACGAA-GAGATTCCTTCTGCAAACGACA-ATGGTACCTTT-TCACAAGATGGGCT 1447
Query 1499 AGTGGAACAAATAAGCATGACCAGAGATAAAACAGATTATTTCTGGTATTTTACGGACAT 1558
|||||||| |||||||| |||||||| || |||||||||||||||||| | || |||||
Sbjct 1448 TGTGGAACAGATAAGCATCACCAGAGACAAGACAGATTATTTCTGGTATCTGACAGACAT 1507
Query 1559 TACAATTGGTTCTGATG-AGAGCTTCTTGAAGACTGGTGATA-ATCCTCTTCTTACCATT 1616
||| || || |||||| | || ||| | ||||||||| | | ||||||||||| |||
Sbjct 1508 TACGATCAGTCCTGATGAAAAG-TTCCT---GACTGGTGA-AGACCCTCTTCTTACTATT 1562
Query 1617 TTTTCGGCTGGGCATGCTCTTCATGTATTCGTTAATGGCCTGCTTGCAGGAACTTCCTAT 1676
|| |||||||||||||||||||||||||||||||| | ||| |||||||| | |||
Sbjct 1563 GGGTCAGCTGGGCATGCTCTTCATGTATTCGTTAATGGTCAGCTAGCAGGAACCGCTTAT 1622
Query 1677 GGAGCACTG-AGCAACTCAAAGCTCACATTTAGTCAAAATATCAAATTG-AGTGTAGGCA 1734
||| ||||| || ||| ||||||| ||||||||||| || |||||||| | || |||
Sbjct 1623 GGATCACTGGAGAAAC-CAAAGCTAACATTTAGTCAGAAGATCAAATTACA-TGCAGGGG 1680
Query 1735 TCAACAAACTTGCTCTGCTT-AGTACTGCAGTGGGTCTTCCGAACGCTGGTGTGCATTAT 1793
| |||||||||||||| || |||| ||||| |||||||||||||| |||||||||||||
Sbjct 1681 TTAACAAACTTGCTCTA-TTGAGTATTGCAGCGGGTCTTCCGAACGTTGGTGTGCATTAT 1739
Query 1794 GAGACTTGGAATACTGGTA-TTCTAGGGCCAGTCACATTGAAGGGAGTAAACTCTGGAAC 1852
||||||||||||||||| | |||| || ||||| ||| |||||||||| ||||| |||||
Sbjct 1740 GAGACTTGGAATACTGG-AGTTCTTGGCCCAGTGACACTGAAGGGAGTTAACTCCGGAAC 1798
Query 1853 ATGGGACATGTCTAAATGGAAGTGGTCTTACAAGATTGGT-CTTAGAGGTGAAGCTATGA 1911
||||||||||||||||||||| |||||||||||||||||| || || ||||||| | |||
Sbjct 1799 ATGGGACATGTCTAAATGGAAATGGTCTTACAAGATTGGTACTAAG-GGTGAAGATCTGA 1857
Query 1912 GCCTTCACACCTTAGCTGGAAGTTC-AGCTGTGAAATGGTGGATCAAAGGA---TTCGTG 1967
|| |||| ||| || | || ||||| | | ||| ||||| | || ||| || |||
Sbjct 1858 GCATTCATACCGTAACCGGGAGTTCCACC-GTGGAATGGAA-AG-AA-GGACCATTAGTG 1913
Query 1968 GTCAAGAAGCAACCCTTGACCTGGTACAAGTCTTCTTTTGATACACCGAGAGGCAACGAA 2027
| ||| |||||||| |||||||||||||||||| ||||||| ||||| | |||||| |||
Sbjct 1914 GCCAAAAAGCAACCTTTGACCTGGTACAAGTCTACTTTTGACACACCAACAGGCAATGAA 1973
Query 2028 CCACTGGCTTTGGACATGAACACAATGGGGAAAGGTCAAGTTTGGGTAAATGGACATAAC 2087
||| ||||||| ||||||||||||||||||||||||||| ||| |||| || || |||
Sbjct 1974 CCATTGGCTTTAGACATGAACACAATGGGGAAAGGTCAAACATGGATAAACGGGCAGAAC 2033
Query 2088 ATTGGACGCCACTGGCCTGCCTACACGGCTCGTGGGAACTGTGGACGTTGCAACTATGCT 2147
||||||||||||||||| || || || ||||||||||| || | ||| |||| ||| ||
Sbjct 2034 ATTGGACGCCACTGGCCGGCATATACAGCTCGTGGGAAATGCGAACGCTGCAGCTACGCC 2093
Query 2148 GGAA-TTTACAACGAGAAGAAATGTCTCAGTCACTGTGGTGAACCTTCTCAAAGATGGTA 2206
|| | ||| || ||||||||||||| | ||| ||||||| ||| ||||||||||||||||
Sbjct 2094 GGGACTTT-CACCGAGAAGAAATGTTTGAGTAACTGTGGAGAAGCTTCTCAAAGATGGTA 2152
Query 2207 CCATGTACCTCGTTCATGGCTAAAACCGTTTGGGAACCTTCTAGTTATATTTGAGGAATG 2266
||||| ||||||||||||||||| || | |||||| ||||| || |||| |||||
Sbjct 2153 TCATGTGCCTCGTTCATGGCTAAAGCCAACTAATAACCTTGTAGTTGTACTTGAAGAATG 2212
Query 2267 GGGTGGTGATCC-AAGTGGAATCTCTCTTGTTAAAAGGACAGCCAAATGA-AGCTT-CTT 2323
||||||||| || || ||| ||||||||||| ||||| | |||||||| | ||||| ||
Sbjct 2213 GGGTGGTGAACCCAA-TGGGATCTCTCTTGTAAAAAGAAGAGCCAAATAATAGCTTTCTG 2271
Query 2324 ACTTCAAATTTTTTCCGGA 2342
||| || ||||||| |||
Sbjct 2272 ACTCCAT-TTTTTTCAGGA 2289
> Ahg917381 jgi|Araly1|917381|Al_scaffold_0008_2132
Length=2181
Score = 1613 bits (873), Expect = 0.0
Identities = 1789/2220 (81%), Gaps = 107/2220 (5%)
Strand=Plus/Plus
Query 142 ATTTTAGGA-ATAAAGCATGGATTATTCTGGCAATTCTGTGTT-TTTCATC-TTTGATT- 197
|||||| || ||||| | |||||| |||||| ||||| |||| ||| ||| || | ||
Sbjct 11 ATTTTA-GAGATAAATCCTGGATTTTTCTGGTGATTCTTTGTTGTTT-ATCATTGGTTTG 68
Query 198 CACTCAACAGAAGCAGT-GGTCACTTATGATCACAAAGCTTTAATCATCAATGGACAGAG 256
| | | | ||||| | ||| ||||||||| |||||| | |||||||||||||| ||
Sbjct 69 TA-T-AGTAAAAGCA-TCAGTCTCTTATGATCGTAAAGCTGTGATCATCAATGGACAAAG 125
Query 257 AAGGATCCTTATCTCCGGTTCTATACACTATCCAAGAAGCACTCCTGAGATGTGGCCTGA 316
||| |||||| |||| ||||| || ||||||||| ||||||| ||||||||||||||||
Sbjct 126 AAGAATCCTTCTCTCTGGTTCCATTCACTATCCACGAAGCACCCCTGAGATGTGGCCTGG 185
Query 317 TCTTATAAAGAAGGCCAAAGAAGGAGGTTTGGATGTTATACAAACATATGTTTTCTGGAA 376
|| ||| |||| |||||||||||||| ||||||||||| | || |||||||| |||||
Sbjct 186 CCTCATACAGAAAGCCAAAGAAGGAGGCTTGGATGTTATTGAGACTTATGTTTTTTGGAA 245
Query 377 TGGACATGAACCTTCTCCTGGA-AATTACTATTTTCAG-GATAGATATGATCTGGTTAAA 434
||| |||||||||||||||||| || || |||||| | || || |||||| |||||||
Sbjct 246 TGGCCATGAACCTTCTCCTGGACAA-TATTATTTT-GGAGACAGGTATGATTTGGTTAAG 303
Query 435 TTCACCAAACTGGTGCACCAAGCTGGACTATATCTTGATCTAAGAATTGGTCCATATGTT 494
|||| ||| |||||||||||||||| || ||| || |||| |||||||| || ||||||
Sbjct 304 TTCATCAAGTTGGTGCACCAAGCTGGTCTCTATGTTAATCTCAGAATTGGCCCTTATGTT 363
Query 495 TGTGCCGAGTGGAATTTTGGGGGATTTCCGGTTTGGCTCAAATATGTTCCTGGTATGG-T 553
||||| || ||||| ||||||||||||||||||||||| |||| |||||| ||||||| |
Sbjct 364 TGTGCTGAATGGAACTTTGGGGGATTTCCGGTTTGGCTTAAATTTGTTCCCGGTATGGCT 423
Query 554 TTTCAGAACAGATAACGAACCTTTCAAGATTGCAATGCAA-AAATTCAC-AAAGAAGATT 611
||| || || ||||| |||||||||||| ||||||| || |||||||| || ||||||
Sbjct 424 TTT-AGGACGGATAATGAACCTTTCAAGGCTGCAATG-AAGAAATTCACTGAA-AAGATT 480
Query 612 G--TGGATATGATGAAAGAAGAAAAGCTGTTTGAGACTCAAGGAGGACCCATCATTC-T- 667
| ||| |||||||||| ||||||| ||||| | |||||||||||||||||||||| |
Sbjct 481 GTATGG--ATGATGAAAGCAGAAAAGTTGTTTCAAACTCAAGGAGGACCCATCATTCTTG 538
Query 668 CTC----ACAGATAGAGAATGAGTATGGACCAATGCAATGGGAGATGGGAGCAGCAGGAA 723
| | |||||| |||||||| ||||||||| || ||||||| || |||||| ||||||
Sbjct 539 CACAGGGACAGATTGAGAATGAATATGGACCAGTGGAATGGGAAATAGGAGCACCAGGAA 598
Query 724 AGGCTTACT-CAAAATGGACAGCTGAAATGGCATTGGGACTGTCCACAGGTGTCCCATGG 782
||||||| | |||||||| |||| |||||||||| ||||| ||||| ||||| ||||||
Sbjct 599 AGGCTTA-TACAAAATGGGTAGCTCAAATGGCATTAGGACTCTCCACTGGTGTTCCATGG 657
Query 783 ATTATGTGCAAGCAAGAGGATGCTCCTTAC-CCTATTATAGACACATGCAATGGATT-TT 840
||||||||||||||||| |||||||||| | ||||| ||||||||||||||||| || ||
Sbjct 658 ATTATGTGCAAGCAAGAAGATGCTCCTT-CTCCTATCATAGACACATGCAATGG-TTATT 715
Query 841 ATTGTGAGGGTTTCAAACCAAACTC-AGACAATAAGCCGAAGTTGTGGACAGAGAACTGG 899
| ||||| | ||||||||||||||| || ||| ||||| ||| ||||||||||||| |||
Sbjct 716 ACTGTGAAGATTTCAAACCAAACTCAAG-CAACAAGCCAAAGATGTGGACAGAGAATTGG 774
Query 900 ACTGGTTGGTTCACGGAATTTGGAGGTGC-GATACCAAATAGACCAGTCGAAGACATTGC 958
|||||||||| ||| || ||||||||||| | ||||| | |||||||||||||| |||||
Sbjct 775 ACTGGTTGGTACACAGAGTTTGGAGGTGCTG-TACCATACAGACCAGTCGAAGATATTGC 833
Query 959 GT-TCTCCGTGGCTCGTTTCATACAGAACGGTGGTTCTTTTATGAATTATTATATGTATT 1017
| | || || || || |||||||| || || ||||| || | ||||| |||||||||
Sbjct 834 ATAT-TCTGTTGCACGATTCATACAAAAAGGAGGTTCCTTCGTCAATTACTATATGTATC 892
Query 1018 ATGGAGGGACCAACTTT-GATAGAACAGCCGGTGTTTTCATCGCCACTAGCTATGACTAC 1076
||||| ||| ||| ||| || ||||||||||||| ||||| || | |||||||||||
Sbjct 893 ATGGA-GGAACAAATTTCGACAGAACAGCCGGTGAGTTCATGGCTTCAAGCTATGACTAT 951
Query 1077 GATGCTCCTATTGACGAATATGGATTACTAAGAGAACCCAAGTATAGTCACTTGAAAG-A 1135
|| |||||| | || ||||| || |||| || |||||| ||||||||||||||||||| |
Sbjct 952 GACGCTCCTCTCGATGAATACGGCTTACCAAAAGAACCAAAGTATAGTCACTTGAAAGCA 1011
Query 1136 GTTACATAAAGTCATCAAGC-TATGTGAACCTGCATTGGTCTCTGTTGATCCCACCATCA 1194
|| |||||||||||||| | || |||| || || ||| | |||| |||| | || |||
Sbjct 1012 -TTGCATAAAGTCATCAAACTTA-GTGAGCCAGCTTTGCTTTCTGCTGATGCTACGGTCA 1069
Query 1195 CATCGCTCGGCGATAAACAAGAA-ATTCATGTGTTCAAGTCCAAGA-CTTCTTGCGCTGC 1252
||||||| || | |||||||||| || |||||||| ||| || | | ||||| |||||
Sbjct 1070 CATCGCTTGGAGCTAAACAAGAAGCTT-ATGTGTTCTGGTCTAA-ATCATCTTGTGCTGC 1127
Query 1253 ATTTCTCTCGAACTACGA-CACGAGTTCTGCAGCAAGAGTTATGTTTAGGGGATTTCCGT 1311
|||| | |||||| | || | || |||||||| ||||||||||| | ||||| || |
Sbjct 1128 ATTTTTATCGAACAAGGATGA-GAACTCTGCAGCGAGAGTTATGTTCCGTGGATTCCCAT 1186
Query 1312 ATGATTTGCCTCCTTGGTCTGTTAGTATTTTACCAGACTGCAAAACCGAATATTACAACA 1371
||||||||||||||||||| || ||||||||||| || |||||||| || | ||||||||
Sbjct 1187 ATGATTTGCCTCCTTGGTCAGTCAGTATTTTACCTGATTGCAAAACAGAGTTTTACAACA 1246
Query 1372 CTGCAAAGATCCGTGCACCAACCATACTTATGAAGATGATTCCTACAAGCA-CAAAGTTT 1430
|||||||| | |||||||| | ||| | ||| ||| ||||||| | | || | ||
Sbjct 1247 CTGCAAAGGTTAATGCACCAAGCGTACACAGGAATATGGTTCCTACTGGTACCAGA-TTC 1305
Query 1431 TCCTGGGAATCGTACAACGAAG-GAAGC-CCTTCTTCAAATGAAGCTGGTACATTTGTTA 1488
|| |||| ||| | |||||||| | | | ||| || | |||||||| ||||| |||| |
Sbjct 1306 TCTTGGGGATCATTCAACGAAGCG-A-CTCCTACTGCGAATGAAGCAGGTACGTTTG-CA 1362
Query 1489 A-AGATGGTCTAGTGGAACAAATAAGCATGACCAGAGATAAAACAGATTATTTCTGGTAT 1547
| | | || || |||||||| ||||||||||| | || ||| | || || |||||||||
Sbjct 1363 AGAAACGGGCTTGTGGAACAGATAAGCATGACTTGGGACAAATCTGACTACTTCTGGTAT 1422
Query 1548 TTTACGGACATTACAATTGGTTCTGATGAGAGC-TTCTTGAAGACTGGTGATAATCCTCT 1606
| || ||||||||||||||||| | ||||| | || ||||||||||||||| |||||
Sbjct 1423 CTAACAGACATTACAATTGGTTCCGGTGAGA-CATTTTTGAAGACTGGTGATTCCCCTCT 1481
Query 1607 TCTTACCATTTTTTCGGCTGGGCATGCTCTTCATGTATTCGTTAATGGCCTGCTTGCAGG 1666
|||||| || | || ||||| ||||| |||||||| || || ||||| | |||| ||||
Sbjct 1482 TCTTACTGTTATGTCAGCTGGACATGCCCTTCATGTGTTTGTCAATGGGCAGCTTTCAGG 1541
Query 1667 AACTTCCTATGGAGCAC-TGAGCAACTCAAAGCTCACATTTAGTCAAAATATCAAA-TTG 1724
|||| | ||||||| || ||| | || |||| ||||| ||||| || || |||||| |
Sbjct 1542 AACTGCTTATGGAGGACTTGA-CCACCCAAAACTCACCTTTAGCCAGAAGATCAAACTAC 1600
Query 1725 AGTGTAGGCATCAACAAACTTGCTCTGCTT-AGTACTGCAGTGGGTCTTCCGAACGCT-G 1782
| || ||| ||||||| |||||||| || ||| |||||||||||| ||||| | | |
Sbjct 1601 A-TGCAGGTGTCAACAAGCTTGCTCT-TTTGAGTGTTGCAGTGGGTCTCCCGAATG-TCG 1657
Query 1783 GTGTGCATTATGAGAC-TTGGAATACTGGTA-TTCTAGGGCCAGTCACATTGAAGGGAGT 1840
|| |||| ||| || ||||||| || | |||| || || |||||||||||||||||
Sbjct 1658 GTACACATTTTGA-ACAGTGGAATAAAGG-AGTTCTTGGTCCGGTCACATTGAAGGGAGT 1715
Query 1841 AAACTCTGGAACATGGGACATGTCTAAATGGAAGTGGTCTTACAAGATTGGTCTTAGA-G 1899
||||| ||||||||||||||||| |||||||| ||||| || ||||||||| || | |
Sbjct 1716 TAACTCAGGAACATGGGACATGTCGAAATGGAAATGGTCCTATAAGATTGGT-GTAAAGG 1774
Query 1900 GTGAAGCTATGAGCCTTCACACC-TTAGCTGGA-AGTTCAGCTGTGAAATGGTGGA-TCA 1956
|||||||| |||| ||||| ||| || | || ||||| | |||| | | |||| ||
Sbjct 1775 GTGAAGCTTTGAGTCTTCATACCGATA-C-CGAGAGTTCCGGTGTG--A-GATGGACTC- 1828
Query 1957 AAGG---ATTCGTGGTCAAGAAGCAACCCTTGACCTGGTACAAGTCTTCTTTTGATACAC 2013
|||| ||| |||| |||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 1829 AAGGATCATTTGTGGCCAAGAAGCAACCATTGACCTGGTACAAGTCTACTTTTGCTACAC 1888
Query 2014 CGAG-AGGCAACGAACCACTGGCTTTGGACATGAACACAATGGGGAAAGGTCAAGTTTGG 2072
| || |||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1889 C-AGCAGGCAATGAACCATTAGCTTTAGACATGAACACAATGGGAAAAGGTCAAGTTTGG 1947
Query 2073 GTAAATGG-ACATAACATTGGACGCCACTGGCCTGCCTACACGGCTCGTGGGAAC-TGTG 2130
||||||| | | ||||||||||| || ||||| || || | ||||| ||| | ||||
Sbjct 1948 ATAAATGGTAGA-AACATTGGACGTCATTGGCCAGCATATAAGGCTC-AAGGATCTTGTG 2005
Query 2131 GACGTTGCAACTATGCTGGAA-TTTACAACG-AGAAGAAATGTCTCAGTCACTGTGGTGA 2188
||||||| ||||| ||||||| ||| ||||| | ||||||||| | ||| | ||||||||
Sbjct 2006 GACGTTGTAACTACGCTGGAACTTT-CAACGCA-AAGAAATGTTTAAGTAATTGTGGTGA 2063
Query 2189 ACCTTCTCAAAGATGGTACCATGTACCTCGTTCATGGCTAAAACCGTTTGGGAACCTTCT 2248
| |||| |||||||||||||||||||||||||||||||| || || | ||| ||| |
Sbjct 2064 AGCTTCACAAAGATGGTACCATGTACCTCGTTCATGGCTTAA---GTCTCAGAATCTTAT 2120
Query 2249 AGTTATATTTGAGGAATGGGGTGGTGATCC-AAGTGGAATCTCTCTTGTT-AAAAGGACA 2306
|||| | ||||| || |||||||||||||| || ||||||||| ||| | ||||| |||
Sbjct 2121 AGTTGTGTTTGAAGAGTGGGGTGGTGATCCTAA-TGGAATCTCA-TTGGTGAAAAGAACA 2178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94882800295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5