BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52850.1
Length=2307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938176 jgi|Araly1|938176|scaffold_502367.1 3195 0.0
Ahg481940 jgi|Araly1|481940|fgenesh2_kg.4__1000__AT2G30290.1 508 5e-143
> Ahg938176 jgi|Araly1|938176|scaffold_502367.1
Length=1913
Score = 3195 bits (1730), Expect = 0.0
Identities = 1853/1914 (97%), Gaps = 2/1914 (0%)
Strand=Plus/Plus
Query 159 AAAGGAAGGAAC-TTGGAATCATGAAGCTTGGGCTTTTCACTCTCTCGTTTCTTCTGATC 217
|||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 AAAGGAAGGAACTTTGGAATCATGAAGCTAGGGGTTTTCACTCTCTCGTTTCTTCTGATC 60
Query 218 TTGAATCTAGCAATGGGTAGATTCGTTGTTGAGAAGAACAATCTCAAAGTTACATCACCT 277
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTGAATCTAGCAATGGGTAGATTCGTTGTGGAGAAGAACAATCTCAAAGTTACATCACCT 120
Query 278 GATTCGATCAAAGGTATTTACGAATGTGCCATTGGTAATTTCGGAGTTCCTCAATACGGT 337
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GATTCGATCAAAGGTATTTACGAATGTGCCATTGGGAATTTCGGAGTTCCTCAATACGGT 180
Query 338 GGTACTTTAGTCGGCACCGTCGTCTATCCTAAATCCAATCAGAAAGCTTGTAAAAGCTAC 397
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTACTTTAGTCGGCACCGTCGTGTATCCTAAATCCAATCAGAAAGCTTGTAAAAGCTAC 240
Query 398 TCCGATTTCGATATCTCCTTCAAATCCAAACCTGGACGATTACCAACTTTTGTCCTTATC 457
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 241 AGCGATTTCGATATCTCCTTCAAATCTAAACCTGGACGATTACCCACTTTTGTCCTTATC 300
Query 458 GATCGTGGAGATTGTTACTTCACTTTGAAAGCATGGATAGCTCAACAAGCTGGAGCAGCA 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATCGTGGAGATTGTTACTTCACTTTGAAAGCATGGATAGCTCAACAAGCTGGAGCAGCT 360
Query 518 GCGATACTTGTAGCTGATAGTAAAGCTGAGCCATTGATTACAATGGATACACCTGAAGAA 577
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GCGATTCTTGTAGCTGATAGTAAAGTTGAGCCATTGATTACAATGGATACACCTGAAGAA 420
Query 578 GATAAATCTGATGCGGATTATCTTCAGAACATTACCATTCCTTCTGCTCTCATTACTAAA 637
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 421 GATAAATCTGATGCGGATTATCTTCAAAACATTACTATTCCTTCTGCTCTCATTACTAAA 480
Query 638 ACATTGGGAGACAGTATAAAGTCTGCTCTTTCCGGTGGTGATATGGTTAACATGAAGCTA 697
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 481 ACATTGGGAGACAGTATAAAGTCTGCGCTTTCCGGTGGTGACATGGTTAACATGAAGCTA 540
Query 698 GATTGGACTGAGTCGGTTCCACATCCTGATGAGCGTGTAGAGTATGAACTGTGGACTAAT 757
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATTGGACTGAGTCGGTTCCTCATCCTGATGAGCGTGTAGAGTATGAACTGTGGACTAAT 600
Query 758 AGCAATGACGAGTGTGGGAAGAAGTGTGATACTCAGATTGAGTTTCTCAAGAATTTTAAA 817
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 601 AGCAATGATGAGTGTGGGAAGAAGTGTGATACTCAGATTGAGTTTCTCAAAAATTTCAAA 660
Query 818 GGAGCTGCTCAGATTCTTGAGAAAGGTGGGCATACTCAGTTCACGCCACATTATATTACT 877
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 661 GGAGCTGCTCAGATTCTTGAGAAGGGTGGGCATACTCAGTTCACGCCACATTATATCACC 720
Query 878 TGGTACTGTCCTGAAGCGTTTACGTTGAGTAAACAGTGTAAGTCTCAGTGCATCAACCAT 937
||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct 721 TGGTACTGTCCTGAAGCTTTTACGCTGAGTAAACAGTGCAAGTCTCAGTGCATCAACCAT 780
Query 938 GGAAGGTATTGTGCGCCTGATCCTGAGCAGGATTTTACGAAAGGGTATGATGGAAAGGAT 997
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GGAAGGTACTGTGCGCCTGATCCTGAGCAGGATTTTACAAAAGGGTATGATGGAAAGGAT 840
Query 998 GTTGTTGTTCAGAATCTACGTCAGGCTTGTGTCTACAGAGTGATGAATGATACCGGTAAG 1057
||||| |||||||||||||| |||||||| |||||||||||||||||||| | |||||||
Sbjct 841 GTTGTCGTTCAGAATCTACGCCAGGCTTGCGTCTACAGAGTGATGAATGAGAGCGGTAAG 900
Query 1058 CCGTGGGTCTGGTGGGACTATGTGACTGACTTTGCTATCCGGTGTCCAATGAAGGAGAAG 1117
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 CCGTGGGTCTGGTGGGACTATGTGACTGACTTTGCCATCCGGTGTCCAATGAAGGAGAAG 960
Query 1118 AAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGGCATTGATCTCAAAAAG 1177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 961 AAGTACACCAAGGAATGCGCAGATCAAATTATTAAGTCCCTTGGCATTGATCTCAAGAAG 1020
Query 1178 GTGGACAAGTGTATCGGAGACCCTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAG 1237
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTGGACAAGTGTATTGGAGACCCTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAG 1080
Query 1238 CAGGAGTCACAGATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTC 1297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGGAGTCCCAGATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTC 1140
Query 1298 GTGAACAACAGACAATACAGAGGTAAATTGGAAAAGGGGGCAGTGCTTAAGGCTATGTGT 1357
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 1141 GTGAACAACAGACAATACAGAGGTAAATTGGAAAAAGGGGCAGTACTTAAAGCTATGTGT 1200
Query 1358 TCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAGATTTGGAAACTAAT 1417
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 TCGGGTTTTCAAGAGTCAACAGAACCAGCTATCTGTCTTACTGAAGAGTTGGAAACTAAT 1260
Query 1418 GAATGTTTGGAAAACAACGGTGGATGCTGGCAAGACAAAGCTGCCAACATTACTGCATGC 1477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1261 GAATGTTTGGAAAACAACGGTGGATGCTGGCAAGACAAATCTGCCAACATTACTGCATGC 1320
Query 1478 AGGGATACTTTTAGGGGAAGATTGTGTGAGTGCCCTACTGTTCAAGGTGTTAAATTCGTT 1537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 AGGGATACTTTTAGGGGAAGATTGTGTGAGTGCCCTACTGTTCAAGGTGTTAAATTTGTT 1380
Query 1538 GGTGACGGTTACACTCACTGCAAAGCCTCTGGAGCTTTGCATTGTGGTATCAACAATGGA 1597
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 GGTGACGGTTACAGTCACTGCAAAGCCTCTGGAGTTTTGCATTGTGGTATCAACAATGGA 1440
Query 1598 GGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTAGATGATCATTCA 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTAGATGATCATTCA 1500
Query 1658 AAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAGATGTG 1717
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AAGGATTGCAAATGCCCACATGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAGATGTG 1560
Query 1718 GACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGG 1777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1561 GACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACATGG 1620
Query 1778 GGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGC 1837
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1621 GGAAGTTATGAATGCAGTTGCAGCAATGGTTTGCTTTACATGCGTGAGCACGACACTTGC 1680
Query 1838 ATAGGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCCTTATA 1897
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1681 ATAGGTTCAGGCAAAGTTGGAACTACAAAACTCAGCTGGAGCTTTTTGTGGATTCTTATA 1740
Query 1898 ATCGGGGTGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAAATACAGAATCAGGAGT 1957
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1741 ATCGGAGTGGGTGTTGCAGGTCTTTCCGGATATGCAGTCTACAAATACAGAATCAGGAGT 1800
Query 1958 TACATGGATGCGGAAATTAGAGGGATCATGGCACAGTACATGCCATTGGAAAGTCAACCA 2017
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1801 TACATGGATGCGGAAATTAGAGGGATCATGGCACAGTACATGCCTTTGGAAAGCCAACCA 1860
Query 2018 CCCAACACAAGTGGTCACCATATGGATATATGAGTGAAGTTATCAACACAAGCC 2071
||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1861 CCCAACACAAGTGGTCACCATATGGATATATGAGTGAAGCTATCAACACA-GCC 1913
> Ahg481940 jgi|Araly1|481940|fgenesh2_kg.4__1000__AT2G30290.1
Length=1872
Score = 508 bits (275), Expect = 5e-143
Identities = 1223/1667 (73%), Gaps = 120/1667 (7%)
Strand=Plus/Plus
Query 232 GGGTAGATTCGTTGTTGAGAAGAACAATCTCAAAGTTACATCACCTGATTCGATCAAAGG 291
||| || |||||||| ||||||||||| ||| || || ||||| || || |||| |||
Sbjct 64 GGG-AGGTTCGTTGTGGAGAAGAACAACCTCCGGGTGACTTCACCGGAGTCCATCAGAGG 122
Query 292 TA-TTTACGAATGTGCCATTGGTAATTTCGGAGTTCCTCAATACGGTGGTA-CTTTAGT- 348
| | |||||||| ||| | || ||||| || || ||||||||||| || | | | ||
Sbjct 123 -AGTCTACGAATGCGCCCTCGGAAATTTTGGCGTCCCTCAATACGGGGGAAGC-AT-GTC 179
Query 349 CGGCACCGTCGTCTATCCTAAATCCAATCAGAAAGCTTGTAA-AAGCTACT-CCGATTTC 406
||| | || || ||||||||| | || ||||||| ||| || || || | ||||||
Sbjct 180 CGGTGCGGTGGTTTATCCTAAAGCTAACCAGAAAGGTTGCAAGAA-CT-TTGACGATTTT 237
Query 407 GATATCTCCTTCAAATCCA-A-AC-CTGGACGATTACCAACTTTTGTCCTTATCGATCGT 463
|| ||||| ||| ||||| | | || | |||| || || || || || |||||||
Sbjct 238 GAGATCTCTTTCCGATCCAGAGTCGCT-G--GATTGCCCACATTCGTTCTCGTCGATCGA 294
Query 464 GGAGATTGTTACTTCACTTTGAAA-GCATGGATA-GCTCAACAAGCTGGAGCAGCAGCGA 521
|||||||||||||||||||| ||| || |||| | || |||| |||||| || ||| | |
Sbjct 295 GGAGATTGTTACTTCACTTT-AAAGGCGTGGA-ACGCACAACGAGCTGGTGCCGCAACCA 352
Query 522 TACTT-GTAGCTGATAGTA-AAG-CTGAGCCATTGATTACAATGGATACACCTGAAGAAG 578
| ||| ||||| |||| | | | |||||| | | || || ||||| |||| || || |
Sbjct 353 T-CTTGGTAGCGGATA--ACAGGCCTGAGCAACTCATCACCATGGACGCACCAGAGGATG 409
Query 579 ATAAATCTGATGCGGATTATCTTCAGAACATTACCATTCCTTCTGC-TCTCATTA-CTAA 636
| | || ||||| ||||| || || || || || |||||||| || | | | | | |
Sbjct 410 AGACGTCAGATGCAGATTACCTACAAAATATCACAATTCCTTCAGCAT-TGGTGAGC-AG 467
Query 637 AACAT-T-GGGA--GACAGTATAAAGTCTGCTC-TTTC-CGGTGGTGATATGGTTAACAT 690
| | | | |||| | || | ||| | || | | | | ||| || ||| | ||
Sbjct 468 ATC-TCTAGGGAGTGCCA-T-CAAA-ACGGC-CATAGCTC-ATGGCGAGCCCGTTCATAT 521
Query 691 GAAG-CTAGATTGGAC-TGAGTCGGTTCCACATCCTGATGAGCGTGTAGAGT-ATGAACT 747
||| ||||| ||| | ||| | ||||||| || | || || |||| | | || ||
Sbjct 522 -AAGTCTAGACTGG-CGGGAGGCTCTTCCACACCCAAACGATCGAGTAG-CTGACGAGCT 578
Query 748 GTGGACTAATAGCAATGACGAGTGTGGGA-AGAAGTGTGATACTCAGATTGAGTTTCTCA 806
||||| ||||||||||| || || ||| || ||||| | ||||||||||||||||
Sbjct 579 ATGGACCAATAGCAATGATGAATG-CGGATCCAAATGTGACGCACAGATTGAGTTTCTCA 637
Query 807 AGA-ATTTTAAAGGAGCTGCTCAGATTCTTGAGAAAGGTGGGC-ATACTCAG-TTCACGC 863
||| | || ||||||||||||||||||||||||||||| || | | |||| | ||||| |
Sbjct 638 AGAGA-TTCAAAGGAGCTGCTCAGATTCTTGAGAAAGGAGG-CTACACTC-GCTTCACTC 694
Query 864 CACATTATATTACTTGGTACTGTCCTGAAGCGTTTACGTTG-A-GTAAACAGTGTAAGTC 921
| || || ||||| |||| ||||||||||| ||| | | | | ||| ||| ||||| ||
Sbjct 695 CCCACTACATTACATGGTTTTGTCCTGAAGCATTT-C-TGGCAAGTAGACAATGTAAATC 752
Query 922 TCAGTGCATCAACCATGGAAGGTATTGTGCGCCTGATCCTGAGCAGGATTT-TACGAAAG 980
|| |||||||| |||||| |||||||| || || || || || ||||| | | | ||
Sbjct 753 ACAATGCATCAA---TGGAAGATATTGTGCTCCCGACCCGGAACAAGATTTCT-CTAGAG 808
Query 981 GGTATGATGG-AAAGGATGTTGTTGTTCAGAATCTACGTCAGGCTTG-TGTCTACAGAGT 1038
| || |||| |||| | || || |||| ||| |||| || ||||| | ||| |||||
Sbjct 809 GATACAATGGGAAAG-ACGTAATTATTCAAAATTTACGCCAAGCTTGCT-TCTTTAGAGT 866
Query 1039 GATGAATGATACCGGTAAGCCGTGGGTCTGGTGGGACTATGTGACTGACTTTGCTATCCG 1098
|| ||||| | || ||||| ||| | |||||||| || || || ||||| || || ||
Sbjct 867 GACCAATGAAAGTGGAAAGCCTTGGCTTTGGTGGGATTACGTCACCGACTTCGCCATTCG 926
Query 1099 GTGTCCAATGAAGGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATT-ATT-AAGTCC 1156
||||| ||||| ||| |||| |||| |||| |||| || ||| || | ||| || ||
Sbjct 927 TTGTCCCATGAAAGAGGAGAAATACAACAAGAAATGTGCTGATC-AAGTCATTCAA-TCT 984
Query 1157 CTTGGCA-TTGATCTCAA-AAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGTGG 1214
||||| | ||||| | || ||| || |||| || || |||||| ||||||| || |
Sbjct 985 CTTGG-AGTTGATGTGAAGAAAATTG-ACAAATGCATTGGAGACATTGAAGCAAATACCG 1042
Query 1215 AGAA-CCCAGTTCTTAAAGCAGAGCAGGA-GTCACA-GATAGGCAAAGGTTCC-CGTGGA 1270
| || ||| |||||||||| ||| || || | |||| | | || |||||| || || |||
Sbjct 1043 AAAATCCC-GTTCTTAAAGAAGAACAAGATG-CACAAGTT-GGAAAAGGT-CCGCGAGGA 1098
Query 1271 GACGTGACTATACTCCCAACTCTTGTCG-TGAACAACAGACAATACAGAGGTAAATTGGA 1329
|| ||||| ||||| |||||| |||| | | ||||| |||||||| ||||| || ||| |
Sbjct 1099 GATGTGACGATACTACCAACTATTGT-GATAAACAATAGACAATATAGAGGGAAGTTGCA 1157
Query 1330 AA-AGGGGGCAGTGCTTAAGGCTATGTGTTC-GGGTTTTCAAGAGTCAACGGAACCAGCT 1387
| | || | |||||||||||| | || || |||||| | ||| | || || ||| |
Sbjct 1158 GAGATCGGCC-GTGCTTAAGGCTCTTTGCTCAGGGTTT-CGTGAGACGACTGAGCCACCA 1215
Query 1388 ATCTGTCTTA-CTGAAGATTTGGAAACTAATGAATGTTTGGAAAACAACGGTGGATGCTG 1446
|| ||| ||| | ||||| | ||||| ||||| ||||| |||||||||| || || ||
Sbjct 1216 ATTTGT-TTAACCGAAGACATAGAAACCAATGAGTGTTTACAAAACAACGGAGGGTGTTG 1274
Query 1447 GCAAGACAA-AGCTGCCAACATTACTGCATGCAGGGATACTTTTAGGGGAAGATTGTGTG 1505
| |||| || | | |||||||||| || |||||||| ||||| || |||||| | |||
Sbjct 1275 GGAAGATAAGA-CAACCAACATTACAGCTTGCAGGGACACTTTCAGAGGAAGAGTATGTC 1333
Query 1506 AGTG-CCCTACTGTTCAAGGTGTTAAATT-CGTTGGTGACGGTTACACTCACTGCAAAGC 1563
| || ||| | |||||||||||| || || | | ||||||||||| || || || ||||
Sbjct 1334 AATGTCCC-ATTGTTCAAGGTGTCAAGTTTC-TAGGTGACGGTTATACACATTGTGAAGC 1391
Query 1564 CTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAATCCCGAGGTGG 1623
|| || || | | ||||||||| ||||||||||| || |||| | || | | | |||
Sbjct 1392 TTCCGGGGCACTACGTTGTGGTATAAACAATGGAGGGTGTTGGAAACAAACTCAAA-TGG 1450
Query 1624 CTTCA-CTTACTCTGCTTGC-GTAGATGATCATTC-AAAGGATTGCAAATG-CCCACTTG 1679
| | || ||||||||| || ||||||||||| ||||| | ||||||| ||| | |
Sbjct 1451 GAAAAACATATTCTGCTTGCCGT-GATGATCATTCGAAAGGCT-GCAAATGTCCCCCC-G 1507
Query 1680 GGTTCAAGGGCGATGGAGTGAA-GAACTGTGAAGATGTGGACGAGTGCAAAGAAAAAACG 1738
| ||||| || |||||| | || || ||| |||||||| | ||||| | || |||||
Sbjct 1508 GATTCAAAGGAGATGGACTCAAAGA-CTGCCAAGATGTGAATGAGTGTGAGGAGAAAACA 1566
Query 1739 GTGTGCCAGTGCC-CAGAGT-GTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCT 1796
| ||| || || | | | || | ||||| || ||||| |||||||| |||||||| || |
Sbjct 1567 GCGTGTCAATGTCGC-G-GTTGCAAATGCAAGAACACATGGGGAAGCTATGAATGTAGTT 1624
Query 1797 GCAGC--AACGGTTTGCTTTACATGC-GTGAGCACGACACTTGCATA 1840
||||| || | || ||||||||| | | || ||||||| |||||||
Sbjct 1625 GCAGCGGAA-GCTT-GCTTTACAT-CAGAGAACACGACATTTGCATA 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86883848845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5