BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52860.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938177 jgi|Araly1|938177|scaffold_502368.1 701 0.0
> Ahg938177 jgi|Araly1|938177|scaffold_502368.1
Length=512
Score = 701 bits (379), Expect = 0.0
Identities = 465/506 (92%), Gaps = 8/506 (2%)
Strand=Plus/Plus
Query 9 AGATCGAGATCGGCGTGAATGGATTATCAGCAAAAGCCGCCGCAGTCTTCTGACCCTTCG 68
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3 AGATCGAGATTGGCGTTAATGGATTATCAGCAAAAGCCGCCGCCGTCTTCTGACCCTTCG 62
Query 69 CCGTCACCGCCTGACCGTCCACCGGGAATCAGATCACCGGAGACCCCCTCGAACAATCAG 128
||||| ||||||||||||||||||||||| | ||||||||| || |||||||||||||||
Sbjct 63 CCGTCTCCGCCTGACCGTCCACCGGGAATTACATCACCGGAAACGCCCTCGAACAATCAG 122
Query 129 AATAATGACATAGAGGACATTATGGCTTGCGTCACAGCCTTGGAAGCTGCTCTGTTACCA 188
||| ||||||||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 123 AATCATGACATAGAGGACATTATGGCTTGCGTCACGGCTTTAGAAGCTGCTCTGTTGCCA 182
Query 189 TGTTTGCCGGCGAGAGAGCTTCAGGCCATCGATCGCTCTCCTCACCCTTCTCATCAAATT 248
|||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||
Sbjct 183 TGTTTGCCCGCGAGAGAGCTTCAAGCTATCGACCGCTCTCCTCATCCTTCTCATCAAATT 242
Query 249 GATGTGGAGCGGCACGCCAGAGATTTCATGGAAGCTGCGAAAAAGCTTCAGCTTTACTTC 308
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 243 GATGTTGAGCGGCACGCCAGAGATTTCATGGAAGCTGCGAAAAAGCTCCAGCTTTATTTC 302
Query 309 ATGGGACTAAAGCGAGAAGATCGCGCGCCCTCGAGAGCTGAAAGCCTTAAGAA-GGATAT 367
|||||| | ||||||||||||||||||||| | |||||||||||||||| ||| ||| ||
Sbjct 303 ATGGGATTGAAGCGAGAAGATCGCGCGCCCACAAGAGCTGAAAGCCTTA-GAAAGGAGAT 361
Query 368 TGCAGTAATGGAGGAAGAGCTTAAGACAAAAGATGAGCTTATAAAGAAGCACATGA-GGC 426
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||
Sbjct 362 TGCAGTAATGGAGGAAGAGCTTAAGACAAAGGATGAGCTTATAAAGAAGCAC-TCAAGGC 420
Query 427 TTTTCCAAGAGTCGCAGAAGCTTGTGAAAGAACAGATTGAGAAACACAGAG-ATGAGCTG 485
|||||||||| || |||||||| |||||||||||||||||||||||| ||| | ||||||
Sbjct 421 TTTTCCAAGAATCCCAGAAGCTAGTGAAAGAACAGATTGAGAAACACCGAGTA-GAGCTG 479
Query 486 GAGAAAGTTTAACAATC-TCTCAATC 510
|||||||| |||||| | ||||||||
Sbjct 480 GAGAAAGTATAACAA-CATCTCAATC 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23712454374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5