BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52890.1
Length=3678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2 4567 0.0
Ahg482608 jgi|Araly1|482608|fgenesh2_kg.4__1668__AT2G36350.1 1314 0.0
> Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2
Length=3179
Score = 4567 bits (2473), Expect = 0.0
Identities = 2861/3041 (94%), Gaps = 55/3041 (2%)
Strand=Plus/Plus
Query 600 GGTAACTGTGATTGTTGCAGGATCTTGTGTAGAAACAGATCACAAGAAGATGAATGATAA 659
||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||
Sbjct 174 GGTAACTGTGATTGTTGCAGGATCTTGTGTAGAAACAGATCAC-AGAAGAAG-ATG--AA 229
Query 660 CTCGGTGGTGCGGCTTTGATTATCTTCAGAGATTTTAGATTCTGTATCCACTCTGTTGCG 719
| |||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 230 --------T-----TTTGATTATCTTCAGAGATTTTAGATACTGTATCAACTCTGTTGCG 276
Query 720 ATGGGGTCGTTTGCAGGCGCTTGTGAGATTGTGGAAGAGAAGGATGATGAAGTAAGATTG 779
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 277 ATGGGGTCGTTT------GCTTGTGAGATTGTGGAAGAGAAAGATGATGAAGTAAGATTG 330
Query 780 CCAAAACATTCCGGGAGATATGGTAAATCGGTTATGGGATCATCAAGTAAGGATTTGGTG 839
||||||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 331 CCAAAACATTCCGGGAGATATGGTAAATCGGTTATGGGATCATCAAGCAAAGA-TT--TG 387
Query 840 GAGCGTAAGCAACGAGAGTATCATGGTTCTCTTGAGTATGACATTGATATGCTTTTTCAG 899
||||| |||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 388 GAGCGGAAGCAAGGAGAATATCATGGTTCTCTTGAATATGACATTGATAAGCTTTTTCAG 447
Query 900 TCTATTTCTGTTAAACCATCTACTACGAGGTTGATGAGTTCTTCTTTCCATCATCATGAG 959
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 448 TCTATTTCTGTTAAACCATC-A--ACGAGGTTGATGAGTTCTTCTTTCCATAATCATGAG 504
Query 960 ACGAGCGCGAGTGCCGGTCCAAGCAGGACCACAAGCCCTTCGAAGAGAATTGCGTCCATG 1019
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 505 ACGAGCGCGAGTGCCGGTCCAAGCAGGACTACAAGCCCTTCGAAGAGAATTGCTTCCATG 564
Query 1020 AAAAAACCAGGGACACCTCAGTCTCCTAGATTTGTTGGTCTCTCTGATTCAGTTTCTTTG 1079
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 565 AAAAAACCAGGGACACCTCAATCGCCTAGATTTGTTGGTCTCTCTGATTCAGTTTCTTTG 624
Query 1080 AAGCAGGCTCTTAGGGATCGTTGCATTTCTAAGGCGTCGGAAATGGCTGCTCAGAAACGG 1139
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 625 AAGCAGGCTCTTAGGGATCGTTGCATTTCCAAGGCGTCAGAAATGGCTGCTCAGAAACGG 684
Query 1140 TTGTCGAAATCTGCTGCTGCATCTCCGAGGGTCTCAGAAGCTGACAGGATAAAGAGTTTG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 685 TTGTCGAAATCTGCTGCTGCATCTCCGAGGGTCTCAGAAGCTGACAGGATTAAGAGTTTG 744
Query 1200 TATAACCAAGTTTCGAATGAATCTACTAGCAGCAGGTCTGGGCTTGTTCCTGTGGACAAG 1259
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 745 TATAACCAAGTTTCGAATGAATCTACTAGCGGCAGGTCTGGGCTTGTTCCTGTGGACAAG 804
Query 1260 GGTAAAGGAAGTTTGGTTGAGATACCTTTGATGCCTGTAAACGATAAACCAAGCTCTTCA 1319
|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 805 GGTAAAGGAAGTTTGGTTGAGATACCTTTGTTGCCCGTAAACAATAAACCAAGCTCTTCT 864
Query 1320 AAGAGCGTACCTCAACGGTTTGAAGATCCTTCTAACCCCATTTCTGAGCCATCTCAAGCT 1379
|||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 865 AAGAGCGTGCCTCAGCGGTTTGAAGAGCATTCTAACCCCATTTCTGAGCCATCTCAAGCT 924
Query 1380 GGAACCAGTTTTGGATTACAAGGAGTGGGGAATCAAACGCGGGAGATTAAGCTGTTGCAT 1439
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 925 GGAACCAGTTTGGGATTACAAGGAGTTGGGAATCAAACGCGGGAGATTAAGCTGTTGCAT 984
Query 1440 AGATCCAACAAACCTGGGTCTTGTCTTAGTTCTGGCAGTGGAGATTATGAGATAGAGTTA 1499
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 AAATCCAACAAATCTGGGTCTTGTCTTAGTTCTGGCAGTGGAGATTATGAGATAGAGTTA 1044
Query 1500 GATGAAAATGTTGCGTCT-CCTTCCACTCATGCATTTGTTGAAGATGATGTGATAGAAAT 1558
|||||||||||||||| | ||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 1045 GATGAAAATGTTGCGT-TGCCTTCCACTTATGCGTTTGTTGAAGACGATGTGATAGAAAT 1103
Query 1559 AGACAAACACGTTACTTCACTGCCATCTCACTCTAGCAAGAAAGTCAATGCGACGGAGCT 1618
||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1104 AGACAAACATGTTACCTCACTGCCTTCTCATTCTAGCAAGAAAGTGAATGCGACGGAGCA 1163
Query 1619 TGACAAGAATATTTC-CTCATCTGCTGTAGACTCAGAGCAGAAAGGGAAGTTGGATGATG 1677
|||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1164 TGACAAAAATA-TTCTCTCATCTGCTTTAGACTCAGAGCAGAAAGGGAAGTTGGATGATG 1222
Query 1678 CACCTAATTCAGGGACAGAGAATG-GCAAAACAGTACGGAAGGTAACAAGAATGATTCCA 1736
|||||| |||||| |||||||| | ||||||| ||||| || ||||||||||||||||||
Sbjct 1223 CACCTAGTTCAGGTACAGAGAA-GTGCAAAACGGTACGCAAAGTAACAAGAATGATTCCA 1281
Query 1737 CGTCCCAAACAACCGAAAAAGAAAATTTTGCTTAAGAAGAAGTTAAAAATCGGGGTTGTG 1796
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1282 CGTCCCAAACAACCGAAAAAGAAGATTTTGCTTAAGAAGAAATTAAAAATCGGGGTGGTT 1341
Query 1797 TCAGCAACTTACCCAACAAAAGACGATGAAGAA-ATTGTTCCTTCCTTGGACTCTAGTGC 1855
||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||
Sbjct 1342 TCAGCAACTTACCCAACAAAAGACGATGAAGAACA-TGTTCCTTCCTTAGATTCTAGTGC 1400
Query 1856 CAATCAACTTCTCTGCCAGAGATGTCACTGTTCGTTGAAGAGCACCAGCATCGATGACAA 1915
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1401 CCATCAACTTCTCTGCCAGAGATGTCACTGTTCGTTGAAGAGCACCAGCATTGATAACCA 1460
Query 1916 CCCACCTTCATATACTTCTAGTCATAATCCTAAGATTTGCACAGATAGTTTGAGCTCTGT 1975
|||||| || |||||| |||||||||||||| |||| |||||||| |||||||||||||
Sbjct 1461 CCCACCCTCGTATACTACTAGTCATAATCCTGAGATATGCACAGACAGTTTGAGCTCTGC 1520
Query 1976 TTC--A-AA------TAAAGAAGCTCATCAAGGATCTGACGAGAACTCCTCTGGCTCGTG 2026
||| | || ||||||||||| |||| ||||||||||||||||||||| || ||
Sbjct 1521 TTCAAATAATGTTGGTAAAGAAGCTCGTCAATTATCTGACGAGAACTCCTCTGGTTCTTG 1580
Query 2027 TAATGTCAGTCAAAGCTCTGAAGCTGACATTGTCATAATGAAACAAGATGTTTCCTCTAG 2086
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1581 TAATGTCAGTCAAAGCTCTGAAGCTGAGATCGTCATAATGAAACAAGATGTTTCCTCGAG 1640
Query 2087 CAATAATAGTGGAATCGGTGCAATGGTAGAAAAAGAAACCGAGAATCCGACTTCCAGTGA 2146
|||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1641 CAATAACAGTGGAATCAGTGCAATGGTAGAAAAAGAAACAGAGAATCCAACTTCCAGTGA 1700
Query 2147 GAAATTCGAGTTCTCTCTGAGTTCAAAAGATAGTCTTGGGGATTATAGCAGGAGCACAAG 2206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 GAAATTCGAGTTCTCTTTGAGTTCAAAAGATAGTCTTGGGGATTATAGCAGGAGCACAAG 1760
Query 2207 CATTAGTGAGGAGAGTAATCTGAGCCGATTTAGCTGTGGGAATAAGCCTCACATGTCGAT 2266
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1761 CATGAGTGAGGAGAGTAATCTGAGTAGATTTAGCTGTGGGAATAAGCCTCACATGTCGAT 1820
Query 2267 GGATGTGAGATGGGAAGCGATTAAGCATATCAAGGTTCAATACGGCTCTTTGGGTTTACG 2326
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1821 GGATGTGAGATGGGAAGCAATTAAGCATGTCAAGGTTCAATACGGCTCTTTGGGTTTACG 1880
Query 2327 ACACTTCAACCTTCTGAAGAAACTTGGTTGTGGAGATATAGGAACAGTCTATCTCGCCGA 2386
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1881 ACACTTCAACCTTTTGAAGAAGCTTGGTTGTGGAGATATAGGAACAGTCTATCTCGCTGA 1940
Query 2387 GCTGATTGGTACAAACTGTTTGTTTGCCATAAAGGTTATGGACAACGAGTTCTTGGCGAG 2446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 GCTGATTGGTACAAACTGTTTGTTTGCCATAAAGGTTATGGACAACGAGTTCTTGGCGAG 2000
Query 2447 AAGGAAAAAGTCTCCCCGGGCACAAGCAGAAAGAGAAATACTTAAAATGTTGGACCATCC 2506
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 AAGGAAAAAGTCTCCGCGGGCACAAGCAGAAAGAGAAATACTTAAAATGTTGGACCATCC 2060
Query 2507 TTTTCTTCCTACATTATACGCGCAATTTACTTCGGATAATTTATCTTGTCTAGTCATGGA 2566
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2061 TTTTCTTCCTACATTATACGCCCAATTTACTTCGGATAATTTGTCTTGTCTAGTCATGGA 2120
Query 2567 ATATTGTCCTGGAGGAGATCTTCATGTCCTCAGACAGAAGCAGCTAGGCCGGTGTTTCCC 2626
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2121 ATATTGTCCTGGAGGAGATCTTCATGTCCTCAGGCAGAAGCAGCTAGGCCGGTGTTTCCC 2180
Query 2627 TGAACCTGCAGCAAGATTCTATGTGGCCGAAATTCTCCTTGCACTGGAGTACTTACACAT 2686
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2181 TGAACCTGCAGCAAGATTCTATGTTGCCGAAATTCTCCTTGCATTGGAGTACTTACACAT 2240
Query 2687 GCTTGGTATCATATACCGAGATCTGAAACCGGAAAACATTCTTGTCCGTGAAGATGGACA 2746
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2241 GCTTGGTATCATATACCGAGATCTGAAACCGGAAAACATTCTTGTCCGCGAAGATGGACA 2300
Query 2747 CATTATGCTTACGGATTTTGACCTCTCACTCCGTTGTGCAGTGAACCCGACTCTTGTCAG 2806
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2301 CATTATGCTTACGGATTTTGACCTCTCACTCCGTTGTGCAGTGAACCCGACTCTTCTCAG 2360
Query 2807 GTCAAACTCTCCACCTGGTAAAGATCCCGCAAGGATTTCAGGTCCATACAACACATCCAA 2866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 GTCAAACTCTCCACCTGGTAAAGATCCCGCAAGGATTTCAGGTCCATACAACACATCCAA 2420
Query 2867 CTGCATACAACCATTCTGTATCACCGAACCATCTTGCCAGGTTTCGTGTTTCAGCCCTAG 2926
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2421 CTGCATACAACCGTTCTGTATCATCGAACCATCTTGCCAGGTTTCGTGTTTCAGCCCTAG 2480
Query 2927 GCTCTCCTCAAACCAACAACAAGGTAGAAAACCAAAAAGGGGTGATCATCTTTCGAAAAC 2986
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2481 GCTCTCCTCAAACCAACAACAAGGTAGAAAACCGAAAAGAGGTGATCATCTTTCGAAAAC 2540
Query 2987 CCAACAACACTTGAGTAGATCATTGCCTCAGCTCGTGGCTGAACCAACCGAAGCAAGATC 3046
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2541 CCAACAACACTTGAATAGATCATTGCCTCAGCTCGTGGCTGAACCAACCGAAGCAAGATC 2600
Query 3047 CAATTCCTTTGTGGGAACACACGAGTACCTAGCCCCAGAGATCATCAAAGGAGAAGGACA 3106
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2601 CAATTCCTTTGTGGGAACACACGAGTACCTAGCTCCAGAGATCATCAAAGGAGAAGGACA 2660
Query 3107 TGGCGCTGCAGTTGACTGGTGGACTTTCGGGGTTCTCCTTTACGAGCTTTTATACGGGAA 3166
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 TGGTGCTGCGGTTGACTGGTGGACTTTCGGGGTTCTCCTTTACGAGCTTTTATACGGGAA 2720
Query 3167 AACACCATTCAAAGGTTACAACAACGACGAGACTTTGGCCAATGTTGTGTTACAGAACCT 3226
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2721 AACACCTTTCAAAGGTTACAACAATGACGAGACTTTGGCCAATGTTGTGTTGCAGAACCT 2780
Query 3227 CAAGTTTCCTGATAGCCCGCTTGTAAGCTTCCAGGCAAAAGACTTGATCAG-GGGACTTC 3285
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 2781 CAAGTTTCCCGATAGCCCGCTTGTGAGCTTCCAGGCAAAAGACTTGATCAGAGGG-CTT- 2838
Query 3286 TTG-TTAAGGAACCAGAGAACAGGCTCGGGTCAGAGAAAGGTTCTGTAGAGATCAAAAGA 3344
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2839 TTGGTTAAGGAACCAGAGAACAGGCTCGGGTCAGAGAAAGGATCTGTAGAGATCAAAAGA 2898
Query 3345 CATCCtttttttGAAGGATTGAATTGGGCTCTGATCCGGTGTGCAATCCCGCCTGAGCTA 3404
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2899 CATCCTTTCTTTGAAGGATTGAATTGGGCTCTGATCCGGTGCGCAATACCGCCTGAGCTA 2958
Query 3405 CCGGATTTCTATGAGTATGGTGGTGGACCAGAGGCAGCGGCGGATTCGCCTGGAGGCAGT 3464
||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||
Sbjct 2959 CCGGATTTCTATGAGTATGGTGGTGGACCGGAGGGGGCAGCGGATTCGCCAGGAGGCAGT 3018
Query 3465 AATAATAGGTATCTTGAATGTAAAGCCATAGGCGATCATCTTGAGTTCGAGTTGTTTTAA 3524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3019 AATAATAGGTATCTTGAATGTAAAGCCATAGGCGATCATCTTGAGTTCGAGTTGTTCTAA 3078
Query 3525 GCAAGACATAGATA--TTCTCTGGTATAAGCATTCAGAGTAAT--CGTTGTTGTAAGTTA 3580
|||| | | ||||| || ||||||| ||| ||||||||||| |||||||||||||||
Sbjct 3079 GCAAAAGACAGATAAATTTTCTGGTAAAAGTATTCAGAGTAAGAACGTTGTTGTAAGTTA 3138
Query 3581 TTATATCT-AAGTTAAATCTAAATGTCTTATATGTAAATTT 3620
|||||||| ||||||||||||||||||| ||||||||||||
Sbjct 3139 TTATATCTCAAGTTAAATCTAAATGTCTAATATGTAAATTT 3179
> Ahg482608 jgi|Araly1|482608|fgenesh2_kg.4__1668__AT2G36350.1
Length=3125
Score = 1314 bits (711), Expect = 0.0
Identities = 1274/1537 (83%), Gaps = 73/1537 (5%)
Strand=Plus/Plus
Query 2013 TCCTCTGGCTCGTGTAATGTCAGTCAAAGCTCTGAAGCTGACATTGTCATAATGAAACAA 2072
||||||| || ||| | || ||| | ||| |||||||| ||||||| || |||||||
Sbjct 1588 TCCTCTGATTCTTGTGAGGTTAGTGATAGCGGTGAAGCTGTCATTGTC--AA-GAAACAA 1644
Query 2073 GATGTTTCCT-CTAGCAATAATAGTGGAATCGGTGCAATG-GTA-GAAAAAGA-AACCGA 2128
|| || | || | |||||| ||||| ||| |||| ||| | | | || || || ||
Sbjct 1645 GAAGTCT-CTCCAAGCAATTATAGTAGAAAAGGTG--ATGCGGATG-AACTGATAAGAGA 1700
Query 2129 GAATCCGACTTCCAGTGAGAAATTCGAGTTCTC-TCTGAGTTCAAAAG-ATAGTCTTGGG 2186
|||||| | |||||| || ||||| || ||||| | |||| || |||| |||| || |||
Sbjct 1701 GAATCCAAATTCCAGCGAAAAATTTGAATTCTCGT-TGAGCTC-AAAGAATAGCCTAGGG 1758
Query 2187 GATTATAGCAGGAGCACAAGCATTAGTGAGGAGAGTAATCTGAGC-CGATTTAGCTGTGG 2245
||||||||||| ||||||||||| ||||||||||| ||||||||| || ||||||||||
Sbjct 1759 GATTATAGCAGCAGCACAAGCATGAGTGAGGAGAGCAATCTGAGCAGGA-TTAGCTGTGG 1817
Query 2246 GAATAAGCCTCACATGTCGATGGATGTGAGATGGGAAGCGATTAAGCATATCAAGGTT-C 2304
||||| ||||||||||| |||||||||||||||||||| ||||||||| | || ||| |
Sbjct 1818 CAATAAACCTCACATGTCTATGGATGTGAGATGGGAAGCAATTAAGCATGTTAA-GTTGC 1876
Query 2305 AATACGGCTCTTTGGGTTTACGACACTTCAACCTTCTGAAGAAA-CTTGGTTGTGGAGAT 2363
| || |||||| | || | ||||| ||||||||| |||| ||| |||||||||||||||
Sbjct 1877 AGTATGGCTCTCTAGGACTCCGACATTTCAACCTTTTGAA-AAAGCTTGGTTGTGGAGAT 1935
Query 2364 ATAGGAACAGTCTATCTCGCCGAGCTGATTGGTACAAACTGTTTGTTTGCCATAAAGGTT 2423
|| |||||||||||||| || |||||| ||||||||||||| ||||||||||||||||
Sbjct 1936 ATCGGAACAGTCTATCTTGCTGAGCTGGTTGGTACAAACTGCCTGTTTGCCATAAAGGTC 1995
Query 2424 ATGGACAACGAGTTCTTGGCGAGAAGGAAAAAGTCTCCCCGGGCACAAGCAGAAAGAGAA 2483
|||||||||||||||||||| ||||||||||| | || ||||||| |||||| | | |
Sbjct 1996 ATGGACAACGAGTTCTTGGCCCGAAGGAAAAAGACACCAAGGGCACAGGCAGAACGGGCA 2055
Query 2484 ATACTTAAAATGTTGGACCATCCTTTTCTTCCTACATTATACGCGCAATTTACTTCGGAT 2543
|| |||||||||||||||||||||||||| ||||| || || |||||||||||||| |||
Sbjct 2056 ATCCTTAAAATGTTGGACCATCCTTTTCTGCCTACCTTGTATGCGCAATTTACTTCAGAT 2115
Query 2544 AATTTATCTTGTCTAGTCATGGAATATTGTCCTGGAGGAGATCTTCATGTCCTCAGACAG 2603
|||||||| ||||| || ||||| ||||||||||| || |||||||||||||| || |||
Sbjct 2116 AATTTATCGTGTCTGGTGATGGAGTATTGTCCTGGTGGTGATCTTCATGTCCTGAGGCAG 2175
Query 2604 AAGCAGCT-AGGCCGGTGTTTC-CCTGAACCTGCAGCAAGATTCTATGTGGCCGAAATTC 2661
|| ||||| | || |||||||| || ||||| ||||| || |||||||| || ||||| |
Sbjct 2176 AAACAGCTCA-GCAGGTGTTTCTCC-GAACCCGCAGCTAGGTTCTATGTAGCAGAAATCC 2233
Query 2662 TCCTTGCACTGGAGTACTTACACATGCTTGGTATCATATACCGAGATCTGAAACCGGAAA 2721
||||||| |||||||||||||||||||||||| | |||||||||||| ||||||| || |
Sbjct 2234 TCCTTGCGCTGGAGTACTTACACATGCTTGGTGTTATATACCGAGATTTGAAACCAGAGA 2293
Query 2722 ACATTCTTGTCCGTGAAGATGGACACATTATGCTTACGGATTTTGACCTCTCACTCCGTT 2781
||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||| | |
Sbjct 2294 ACATTCTAGTCCGAGAAGATGGTCACATCATGCTTACAGATTTTGACCTCTCACTCAGAT 2353
Query 2782 GTGCAGTGAACCCGACTCTTGTCAGGTCAAAC-TCTCCACCTG-GTAAAGATCCCGCAAG 2839
|||| |||||||| |||||| |||| || ||| |||||||| | | ||||||||||||||
Sbjct 2354 GTGCGGTGAACCCTACTCTTCTCAGATC-AACTTCTCCACCCGAG-AAAGATCCCGCAAG 2411
Query 2840 GATTTCAGGTCCATACAACACATCCAACTGCATACAACCATTCTGTATCACCGAACCATC 2899
||| || |||||||||||||||||||| ||||||||||| ||| | | | ||||||||
Sbjct 2412 GATGTCGGGTCCATACAACACATCCAATTGCATACAACC--TCTATGT-ATTGAACCATC 2468
Query 2900 TTG-CCAGGTTTCGTGTTTCAGCCCTAGGCTCTCCTCAAACCAA-C----AA-C---AAG 2949
|| | | || | ||||||||||||||||||| |||| |||| | || | ||
Sbjct 2469 ATGTCGA-GTCCCATGTTTCAGCCCTAGGCTCTTATCAACCCAAGCTAGAAATCAAAAAC 2527
Query 2950 GTAGAAAACCAAAAAGGGGTGATCATCTTTCGAAAACCCAACAACACTTGAGTAGATCAT 3009
|||||||| |||||| ||||| | ||| | | | |||||| || |||||||
Sbjct 2528 CAAGAAAACCGAAAAGGCCTGATC-T-TTT-G---A--C-ACAACAGTT---CAGATCAT 2575
Query 3010 TGCCTCAGCTCGTGGCTGAACCAACCGAAGCAAGATCCAATTCCTTTGTGGGAACACACG 3069
|||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 2576 TGCCTCAGCTTGTGGCTGAACCAACCGAAGCAAGATCAAATTCGTTTGTGGGAACGCACG 2635
Query 3070 AGTACCTAGCCCCAGAGATCATCAAAGGAGAAGGACATGGCGCTGCAGTTGACTGGTGGA 3129
||||| | |||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 2636 AGTACTTGGCCCCAGAGATCATTAAAGGAGAAGGACATGGTGCTGCAGTAGACTGGTGGA 2695
Query 3130 CTTTCGGGGTTCTCCTTTACGAGCTTTTATACGGGAAAACACCATTCAAAGGTTACAACA 3189
| |||||||| || || || |||||||| |||||||| ||||| |||||||||||| |||
Sbjct 2696 CATTCGGGGTCCTTCTCTATGAGCTTTTGTACGGGAAGACACCTTTCAAAGGTTACGACA 2755
Query 3190 ACGACGAGACTTTGGCCAATGTTGTGTTA-CAGAACCTCAAGTTTCCTGATAGCCCGCTT 3248
| || ||||| || |||||||||| || |||||||||||||||||||||||||||||
Sbjct 2756 ATGAGGAGACACTGTCCAATGTTGT-ATACCAGAACCTCAAGTTTCCTGATAGCCCGCTC 2814
Query 3249 GTAAGCTTCCAGGCAAAAGACTTGATCAGG-GGACTTCTTGTTAAGGAACCAGAGAA-CA 3306
|| |||||||||||||| || |||||||| || || || || ||||| ||||||| |
Sbjct 2815 GTGAGCTTCCAGGCAAAGGAGTTGATCAGAAGG-CTGCTGGTGAAGGATCCAGAGAGTC- 2872
Query 3307 GGCTCGGGTCAGAGAAAGGTTCTGTAGAGATCAAAAGACATCCtttttttGAAGGATTGA 3366
| |||||||| |||||||| ||| |||||||||||||||||| || |||||||||||||
Sbjct 2873 GTCTCGGGTCTGAGAAAGGAGCTGCAGAGATCAAAAGACATCCCTTCTTTGAAGGATTGA 2932
Query 3367 ATTGGGCTCTGATCCGGTGTGCAATCCCGCCTGAGCTACCGGATTTCTATGAGTATGGTG 3426
|||||||||| ||||| || || || ||||||||||| || ||| ||||||| ||||||
Sbjct 2933 ATTGGGCTCTCATCCGATGCGCCATACCGCCTGAGCTGCCAGATATCTATGACAATGGTG 2992
Query 3427 GTGGACCAGAGGCAGCGGCGGATTCGCCTGGAGGCAGTAATAATAGGTATCTTGAATGTA 3486
||| || |||| | ||| |||| ||| | ||||||||||||||||||||||
Sbjct 2993 -----CCAC-GGAAGCGAC---TTCTCCTG-AGGGA--AATAATAGGTATCTTGAATGTA 3040
Query 3487 AAGCCATAGGCGATCATCTTGAGTTCGAGTTGTTTTA 3523
||||||| || |||||||| |||||||||||||||||
Sbjct 3041 AAGCCATCGGAGATCATCTCGAGTTCGAGTTGTTTTA 3077
Score = 399 bits (216), Expect = 5e-110
Identities = 978/1320 (74%), Gaps = 155/1320 (12%)
Strand=Plus/Plus
Query 719 GATGGGGTCGTTTGCAGGCGCTTGTGAGATTGTGGAAGAGAAGGATGATGAAGTAAGATT 778
|||||| || ||||| || ||||||| ||||| || |||||||||| || || || ||
Sbjct 228 GATGGGATCATTTGCTGGTTCTTGTGAAATTGTTGAGGAGAAGGATG-TG--GTCAGGTT 284
Query 779 -GCCAAAACATTCCGGGAGATATGGTAAATC-GGTTATGGGATCATCAAGTAAGGATTTG 836
||| |||||||| | |||||| ||| || || |||| ||||||||| ||| ||
Sbjct 285 GGCC-AAACATTCTAGCAGATATTGTATGTCACCTT-TGGG---ATCAAGTAAAGATATG 339
Query 837 GTGGAGCGT-AAGCA---ACG--AGAGTATCATGGTTCTCTTGAGTATGACATTGAT-AT 889
| | ||||| ||| | | || ||| || |||||| | |||||||| |||||| |
Sbjct 340 GAGCAGCGTCCTGCACTCAAGTCAGGGTACCAAGGTTCTATGGAGTATGATATTGATCA- 398
Query 890 GCTTTTTCAGTCTATTTCTGTTAAACCATCTA--C-TACGAGGTTGATGAGTTCTTCTTT 946
|||||| |||||||| || | |||||||| | | |||| | ||||| | ||||||||
Sbjct 399 GCTTTTCCAGTCTATAACTATAAAACCATC-ACCCAGACGA-G-TGATGGGCTCTTCTTT 455
Query 947 CCATCATCATGAGACGAGCGCGAGTGCCGGTCCAAGCAGGACCACAAGCCCTTCGAAGAG 1006
|||||||| |||||||||||| ||||| ||| | ||||||| |||||||||||| || |
Sbjct 456 CCATCATCTTGAGACGAGCGCAAGTGCTGGTACTAGCAGGAGCACAAGCCCTTC-AA-AA 513
Query 1007 AATTGCGTCCATGAAAAA-------ACCA-GGG-ACACCTCAG-TCTCCTAGATTTGTTG 1056
|| |||| | |||||||| ||| ||| || |||| | || || ||| ||||
Sbjct 514 AAATGCG-CTATGAAAAAGCCCTTTCCCATGGGTACCCCTC-GATCACCAAGA---GTTG 568
Query 1057 GTCTCTCTGATTCAGTTTCTTTGAAGCAGGCTCTTAGGGATCGTTGCATTTCTAAGGCGT 1116
| | |||||||||| | || ||||||||||||| || |||| |||||| || ||||| |
Sbjct 569 GCCCCTCTGATTCAATATCACTGAAGCAGGCTCTGAGAGATCTTTGCATCTCCAAGGCAT 628
Query 1117 CGGAAATGGCTGCTCAGAAACGGTTGTCGAAATCTGCTGCTGCATCTCCGAGGGTCTCAG 1176
| ||||||||| | |||||||| || || |||||||||||||||||||||||||| || |
Sbjct 629 CAGAAATGGCTTCCCAGAAACGTTTATCAAAATCTGCTGCTGCATCTCCGAGGGTTTCTG 688
Query 1177 AAGCTGACAGGATAAAGAGT-TTGTATAACCAAGTTTCGAA-TGAATCTACTAGCAGCAG 1234
|||| ||||||||||||||| || || | ||||||| || ||||||||| | ||||
Sbjct 689 AAGCAGACAGGATAAAGAGTCTT-TACAGGCAAGTTT-TAAGTGAATCTAC---CGGCAG 743
Query 1235 GTCTGGGCTTGTTCCTGTGGACAAGGGTAAAGGAAGTTTGGTTGAGATACCTTTGATGCC 1294
| |||||| |||||||||| |||||| || ||| |||||||| ||| |||||| |||
Sbjct 744 GGCTGGGC---TTCCTGTGGATAAGGGT-AA--AAGCTTGGTTGAAATATCTTTGACGCC 797
Query 1295 TGTAAACGATAAACCAAGCTCTTCAAAGAGCGTACCTCAAC-----G--GT--TT--GA- 1342
|||||||||| ||| ||||| || |||| |||||||| | | || || ||
Sbjct 798 GGTAAACGATATACCCAGCTCCTCCCAGAGTGTACCTCAGCGGTTTGATGTCCTTGAGAC 857
Query 1343 AGATCCTTCTAACCCCATTTCTGAGCCATCTCAAGCTGGAA-CCAGTT-T---TGGA-TT 1396
||| |||| |||| ||||||||| |||||||| |||| || || || | | | ||
Sbjct 858 AGAGCCTTTTAACTTCATTTCTGAACCATCTCAGGCTGAAATCC--TTCTCCACGTACTT 915
Query 1397 ACAAGGAG-TGGGGAATCAA-AC-GCGGGAGAT-TAA-GCT---G-TTGCAT--A---G- 1441
|| || | |||| | || || | |||| || || ||| | ||||| | |
Sbjct 916 GGAAATAGCTCGGGATTAAAGACAGTGGGATATGAAATGCTGGAGAATGCATCAATGTGT 975
Query 1442 --ATCCAACAAACCTGGGTCTTGTCTTAGTTCTGGCAGTGGAGATTATGAGATAGAGTTA 1499
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 976 AAATCCAACAAATCTGGATCTTGTCTCAGTTCTGGCAGTGGAGATTATGAGATAGAGATA 1035
Query 1500 GATGAAAATGTTGCGTCTCCTTCCACTCATGCATTTGTTGAAGATGA-TGTGATAGAAAT 1558
||||||||| | | |||||| || ||||| | |||||||| | | || | |||||
Sbjct 1036 GATGAAAATCCTACATCTCCT-CC--TCATGTGGTCATTGAAGATCAAT-TGGTGGAAAT 1091
Query 1559 AGACAAACACGTTACTTCACTGCCATCTCACT-CTAGCAAG-AAAGTCAATGC-GACGGA 1615
||||||||| ||||| || ||||| || | | || ||| | ||||| |||| || | |
Sbjct 1092 AGACAAACATGTTACCTCGCTGCCTTC-CTGTTCTGGCA-GCAAAGTTGATGCTGAAG-A 1148
Query 1616 GCTTGACAAGA--AT-ATTTCCTCATCT-GC-TG-----T-AG--A-CT-CA--GAGC-- 1656
||| |||| || || || || ||| || | || | || | | | | ||
Sbjct 1149 GCTAGACAGGAGCATCATCTCATCAGCTAGAGTGAAAAGTGAGCCAACCGCTTTGGGCTC 1208
Query 1657 AG----AAAGGGAA-GTTGGATGA-TGCACCTAATTCAGGGACAGAGAATG-GCAAAACA 1709
|| ||| |||| ||||||| | | |||||| |||||| |||||||| | ||||| |
Sbjct 1209 AGGGTTAAAAGGAAAGTTGGATAACT-CACCTAGTTCAGGAACAGAGAA-GAGCAAACCG 1266
Query 1710 GTACGGAAGGTAACAAGAA-TGATTCCACGTCCCAAACAACCG--AAA-AAGAAAATTTT 1765
||| | |||||| |||||| | || ||||||||||||| | | ||| ||||| || ||
Sbjct 1267 GTAAGCAAGGTAGCAAGAAAT-ATCCCACGTCCCAAACCGCGGCCAAAGAAGAAGATATT 1325
Query 1766 GCTTAAGAAGAAGTTAAAAATCGGGGTTGTGTCAGCAACTTACCCAACAAAAGACGAT-G 1824
|||||| |||||| ||||||| | |||| ||| || | | ||||| | | | |
Sbjct 1326 GCTTAAAAAGAAGCTAAAAATTG---TTGT---AGCTTCTG-CT-A-CAAAA-ATGGTCG 1375
Query 1825 AAGAAATTGTTCCTTCCTTGGA-CTCTAGTGCCAA-TCAACTTCTCTGCCAGAGATGTCA 1882
| ||| | | | ||||||| || | ||||||| || ||||||||| ||||||||||| ||
Sbjct 1376 AGGAAGTCGATACTTCCTTAGAGC-CTAGTGC-AAGTCAACTTCTGTGCCAGAGATGCCA 1433
Query 1883 CTGTTCGTTGAAGAGCACCAGCA-TCGATGACAACCCACCTTCATATACTTCTAGTCATA 1941
|||| || | ||||||||||||| | || || ||||||| || || | | |||||||||
Sbjct 1434 CTGTGCGGTAAAGAGCACCAGCACT-GAAAACCACCCACCCTC-TA-A-TACTAGTCATA 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138948199023
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5