BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52900.1
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485662 jgi|Araly1|485662|fgenesh2_kg.5__1654__AT3G52900.1 1055 0.0
Ahg482609 jgi|Araly1|482609|fgenesh2_kg.4__1669__AT2G36355.1 414 3e-115
> Ahg485662 jgi|Araly1|485662|fgenesh2_kg.5__1654__AT3G52900.1
Length=681
Score = 1055 bits (571), Expect = 0.0
Identities = 646/682 (95%), Gaps = 6/682 (1%)
Strand=Plus/Plus
Query 10 aaaaaaaaTGAGTAGCAAGAATAACTCCGGAGCTGCTGCAGTTTCTGGAGTCAACACCAA 69
||||||||||||||||||||| |||| |||||||| |||| |||||||||||||| |||
Sbjct 1 AAAAAAAATGAGTAGCAAGAACAACTTAGGAGCTGCAGCAGCTTCTGGAGTCAACATCAA 60
Query 70 CGGTAAGCTACCAATGGAGGACAATGAAGAAGAAGAGATATGGAAAGTTGCAGTGACGAG 129
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CGGTAAGTTACCAATGGAGGAGAATGAAGAAGAAGAGATATGGAAAGTTGCAGTGTCGAG 120
Query 130 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAGTTCA 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAGTTCA 180
Query 190 ACAGCGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACATTGGAAGAGCT 249
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 ACAGAGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACCTTGGAAGAGCT 240
Query 250 AGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGTATGGTGAGGAAGAAAATCGACAT 309
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 AGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGAATGGTGAGGAAGAAAATCGACAT 300
Query 310 GGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACAA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACAA 360
Query 370 AGACACATTGGAAGCTTTCAATGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCCATGTT 429
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGACATTGGAAGCTTTCAACGAGAAGAACAAAGAGAAAGCTCACCTTGTTTCCATGTT 420
Query 430 AATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAACAA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAACAA 480
Query 490 GACTGTTGGAACCTTGCAATGAGGAGAAGCAATCTACATGGATCTTACCTTAAAAGAGAG 549
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 481 GACTGTTGGAACCTTGCAATGAGGAGAAGCAATCCACATGGATCTTACCTTGAAAGAGTC 540
Query 550 TGAAAATTTGTTTAAG-TTTTTGGTATTACACTCTATCCAGGTCCTC-CTATTAAAAGTG 607
||||||||||||| || |||||||||||| | ||||| ||||||||| |||| ||| | |
Sbjct 541 TGAAAATTTGTTTGAGGTTTTTGGTATTAGATTCTATTCAGGTCCTCTCTATCAAACGCG 600
Query 608 AGCTACGATGTAACAGGATGTACGATAAATGAATGGT--GC-TAAGGTTTAAAGATATGA 664
|||||| ||||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 601 AGCTACAATGTAACAGGATGTACGATAAATGA-TGATTTGCCTAAGGTTTAAAGATATGA 659
Query 665 ATGCAGCGAAAAACGAATTTCT 686
|||||||| ||||| |||||||
Sbjct 660 ATGCAGCGGAAAACAAATTTCT 681
> Ahg482609 jgi|Araly1|482609|fgenesh2_kg.4__1669__AT2G36355.1
Length=699
Score = 414 bits (224), Expect = 3e-115
Identities = 329/380 (87%), Gaps = 6/380 (2%)
Strand=Plus/Plus
Query 130 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAG-TTC 188
|||||||||||||||||||||||||||||| ||||||||| | ||||||| | ||| |||
Sbjct 157 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGAAAGAAGATGGCAGTTAAGG-ACAAGATTC 215
Query 189 AACAGCGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACATTGGAAGAGC 248
||||||| || || |||||||| ||||| |||||| |||| || || |||||||||| ||
Sbjct 216 AACAGCGACTTGGGTTTGCAGAAGAAGCCACAAGAAGCTTGACACAGACATTGGAAGGGC 275
Query 249 TAGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGTATGGTGAGGAAGAAAATCGACA 308
||||||| ||||||||||| ||||| || ||||| || ||||| || ||||||||||| |
Sbjct 276 TAGAGATCATGGGAGATCCAATGAGGAAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGA 335
Query 309 TGGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACA 368
|||| ||| |||| |||||||||||| | || ||||| ||||| ||||||||||||||||
Sbjct 336 TGGCAAATAGAGAAATCAAATCTTTGTCTCAGAGCTGCCAGAAGAAGGAGAAGGAATACA 395
Query 369 AAGACA--CATTGGAAGCTTTCAATGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCCAT 426
|||| | || |||||| ||| | |||||||||||||||||||||||||||||||| ||
Sbjct 396 AAGAGATCCA--GGAAGCATTCGACGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCAAT 453
Query 427 GTTAATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAA 486
|||||||||||||||||||||||||||||| ||||| | ||||| ||||| || |||||
Sbjct 454 CTTAATGGAGCTACTGGCTGAAAGTGAAAGAGTAAGGGTGAAGAAGCTGGAAGATATCAA 513
Query 487 CAAGACTGTTGGAACCTTGC 506
|||||||||||| ||||||
Sbjct 514 CAAGACTGTTGGGTCCTTGC 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5