BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52910.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323835 jgi|Araly1|323835|fgenesh1_pm.C_scaffold_5001379 1808 0.0
> Ahg323835 jgi|Araly1|323835|fgenesh1_pm.C_scaffold_5001379
Length=1629
Score = 1808 bits (979), Expect = 0.0
Identities = 1087/1135 (96%), Gaps = 24/1135 (2%)
Strand=Plus/Plus
Query 182 ATGGACTTGCAACTGAAACAATGGAGAAGTCAGCAGCAGAATGAGTCAGAAGAACAAGGC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACTTGCAACTGAAACAATGGAGAAGTCAGCAGCAGAATGAGTCAGAAGAACAAGGC 60
Query 242 TCTGCTGCAACTAAGATATCAAACTTTTTCTTTGATCAGATTCAGTCCCAAACTGCTACT 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TCTGCTGCAACTAAGATATCAAACTTTTTCTTTGATCAGATTCAGTCCCAAACTGCAACT 120
Query 302 TCTGCTGCTGCGGctcctcttcctctctttgtccctgaacccacttcttcctcttctttc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGCTGCTGCGGCTCCTCTTCCTCTCTTTGTCCCTGAACCCACTTCTTCCTCTTCTTTC 180
Query 362 tcttgcttctctcctgactcttctaattcttcttcttcttcCAGGTTCCTCAAGATGGGA 421
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 TCATGCTTCTCTCCTGACTCTTCTAA--CT-CTTCTTCTTCCAGGTTCCTCAAGATGGGA 237
Query 422 AACTTCTTCAGCTGGGCACAGTGGCAAGAACTTGAGCTACAAGCACTGATCTATAGATAC 481
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACTTTTTCAGCTGGGCACAGTGGCAAGAACTTGAGCTACAAGCACTGATCTATAGATAC 297
Query 482 ATGTTGGCTGGTGCTTCTGTTCCTCAAGAGCTTCTCTTACCTATTAAGAAAAGTCTCCTC 541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 298 ATGTTGGCTGGTGCTTCTGTTCCTCAAGAGCTTCTCTTACCTATCAAGAAAAGTCTCATC 357
Query 542 CATCAATCTCCTATGCATTTCCTTCACCATCCTCTTCAACATAGTTTTCCTCATCACCAA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CATCAATCTCCTATGCATTTCCTTCACCATCCTCTTCAACATAGTTTTCCTCATCACCAA 417
Query 602 CCTTCTTGGTATTGGGGAAGAGGAGCAATGGATCCTGAGCCAGGGAGGTGTAAGAGAACT 661
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 CCTTCTTGGTACTGGGGAAGAGGAGCAATGGATCCTGAGCCAGGGAGGTGCAAGAGAACA 477
Query 662 GACGGCAAGAAATGGAGATGTTCAAGGGATGTTGTAGCGGGCCACAAGTATTGTGACCGC 721
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 GACGGCAAGAAATGGAGATGTTCAAGGGATGTTGTAGCCGGCCACAAGTATTGTGACCGC 537
Query 722 CACATTCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCACCATC 781
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 CACATCCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCACCACC 597
Query 782 ACAACGACAGCCACAACAACCGCATCTTCTTTTGTCTTAGGTGAGGAGCTTGGTCATGGA 841
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 ACAACAACAGCCACAACAACCGCATCTTCTTTTGTCTTAGGAGAGGAGCTTGGTCATGGA 657
Query 842 CCAAACAACAACCACTTCTTCTCCTCTGGTTCATCTCAACCTCTCCACCTTAGTCATCAA 901
|||||||||| || | || ||||||||||||| |||||||||||||||||||
Sbjct 658 CCAAACAACA-CC--T-CT--------GGTTCATCTCAACATCTCCACCTTAGTCATCAA 705
Query 902 CAAAGTTGTTCTTCAGAGATGAAACAAGAAAGCAACAACAACAAGAGGCCATATGAAGCT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CAAAGTTGTTCTTCAGAGATGAAACAAGAAAGCAACAACAACAAGAGGCCATATGAAGCT 765
Query 962 AACAGTGGATTCAGCAATGGAAGATCAGACGATGGTCACATCTTGAGGCATTTCTTTGAC 1021
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AACAATGGATTCAACAATGGAAGATCAGACGATGGTCACATCTTGAGGCATTTCTTTGAC 825
Query 1022 GATTGGCCACGATCATCAGACTCTACCTCCAGTCCAATGAGCTCATCCACTTGTCATCTT 1081
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 826 GATTGGCCACGATCATCGGACTCTACTTCCAGTCCAATGAGCTCATCCACTTGTCATCTT 885
Query 1082 TCAATCTCCATGCCCGGTAAC---AACACGTCCTCAGATGTTTCTCTAAAACTTTCCACA 1138
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 886 TCAATCTCCATGCCCGGTAACCGTAACGCTTCCTCAGATGTTTCTCTAAAACTTTCCACA 945
Query 1139 GGCAATGAAGAAGAAGAAGAGAACATGAGAAATAACAACAATGAGAGGGAGCAAATGAAT 1198
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 946 GGCAATGAAGAAGAAGAAGAGAACATGAGAAA---CAACAATGAGAGGGAGCAATTGAAT 1002
Query 1199 TGGTGGAGCAATGGAGGGAATCACCACAACAATATGGGAGGACCATTAGCTGAGGCTTTG 1258
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1003 TGGTGGAGCAATGGAGGGAACCACCACAA---TATGGGAGGACCATTAGCTGAGGCTTTG 1059
Query 1259 AGGTCAGCTTCTTCGACGTCAAGTGTTCTTCATCAGATGGGAATCTCTACTCAAG 1313
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1060 AGGTCAGCTTCTTCGACGTCTAGTGTTCTTCATCAGATGGGAATCTCAACTCAAG 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5