BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52920.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323836 jgi|Araly1|323836|fgenesh1_pm.C_scaffold_5001380 787 0.0
Ahg482617 jgi|Araly1|482617|fgenesh2_kg.4__1677__AT2G36410.1 448 5e-125
> Ahg323836 jgi|Araly1|323836|fgenesh1_pm.C_scaffold_5001380
Length=459
Score = 787 bits (426), Expect = 0.0
Identities = 446/456 (98%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 301 ATGATGAGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGAGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCT 60
Query 361 GCTCTCTCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCTCTCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGT 120
Query 421 GAAAGGGTTAAGGCTCAGCTTGGTCGTGTTGAGGAAGAGACTCGTCGTCTTGCTAGTATC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAGGGTTAAGGCTCAGCTTGGTCGTGTTGAGGAAGAGACTCGTCGTCTTGCTAGTATT 180
Query 481 CGCGAGGAGCTTGAGACAATGGCAGATCCCATGAGGAAGGAAGTTAATTGGGTGCGTAAG 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCGAGGAGCTTGAGACTATGGCAGATCCCATGAGGAAGGAAGTTAATTGGGTGCGTAAG 240
Query 541 AAGATTGATAGCGTCAACAAAGAACTCAAACCATTAGGCTCTACTGTTCAAAAGAAGGAA 600
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 241 AAGATTGATAGTGTCAACAAAGAACTTAAACCATTAGGCTCTACAGTTCAAAAGAAGGAA 300
Query 601 AGGGAATACAAAGAAGCATTGGATACGTTCAACGAGAAGAATCGTGAGAAAGTTCAGCTG 660
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 301 AGGGAATACAAAGAAGCATTGGATACATTCAACGAGAAGAACCGTGAGAAAGTTCAGCTG 360
Query 661 ATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAG 420
Query 721 AAGCTGGATGAGCTAAGCAGGAGCATAGACACAGAG 756
||||||||||||||||||| ||||||||| || |||
Sbjct 421 AAGCTGGATGAGCTAAGCAAGAGCATAGAGACCGAG 456
> Ahg482617 jgi|Araly1|482617|fgenesh2_kg.4__1677__AT2G36410.1
Length=1135
Score = 448 bits (242), Expect = 5e-125
Identities = 381/447 (85%), Gaps = 14/447 (3%)
Strand=Plus/Plus
Query 310 TTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCTGCTCTCTCT 369
|||||||||||||| || ||||| | ||||||||||||||| ||||||||||||| ||
Sbjct 361 TTGAGTTTTAGTAGCCATATGTCGAGGGAAGACGAAGAGATGACTCGTTCTGCTCTTTCG 420
Query 370 GCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGTGAAAGGGT- 428
|| ||||| |||||||||||||||||||||||||||| |||||||| |||||| || |
Sbjct 421 GCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAGGATGGAAGTCCGTGAACGGATC 480
Query 429 TAAGGCTCAGCTT-GGTCGTGTTGAGGAAGAGACTC-GTCGTCT-TGCTAGTATCCGCGA 485
|| ||||| || ||||| || ||| |||| || | ||||| | | | ||| || ||
Sbjct 481 CAA-GCTCA-ATTGGGTCGGGTCGAGCAAGAAAC-CAAACGTCTCT-CCACTATTCGTGA 536
Query 486 GGAGCTTGAGACAATGGCAGATCCCATGAGGAAGGAAGTTAAT-TG-GGTGCGTAAGAAG 543
|||||||||| | ||||||||||| ||||||||||||||| | || ||| |||||||||
Sbjct 537 GGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTT--TCTGTGGTTCGTAAGAAG 594
Query 544 ATTGATAGCGTCAACAAAGAACTCAAACCATTAGGCTCTACTGTTCAAAAGAAGGAAAGG 603
|||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 595 ATTGATAGTGTTAACAAAGAACTCAAACCTTTAGGTTCCACTGTTCAAAAGAAGGAAAGG 654
Query 604 GAATACAAAGAAGCA-TTGGATACGTTCAACGAGAAGAATCGTGAGAAAGTTCAGCTGAT 662
||||||||||||||| ||| |||| ||||| |||||||| || |||||||| ||||||||
Sbjct 655 GAATACAAAGAAGCACTTG-ATACATTCAATGAGAAGAACCGGGAGAAAGTACAGCTGAT 713
Query 663 CACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAGAA 722
||| || || |||||||||| ||||||||||||||||||||||||| ||||| ||| ||
Sbjct 714 CACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAAGTTGAGGATGATTAA 773
Query 723 GCTGGATGAGCTAAGCAGGAGCATAGA 749
|||||| ||||| |||| |||||||||
Sbjct 774 GCTGGAGGAGCTGAGCAAGAGCATAGA 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5