BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52940.1 Length=1465 Score E Sequences producing significant alignments: (Bits) Value Ahg938187 jgi|Araly1|938187|scaffold_502378.1 1912 0.0 > Ahg938187 jgi|Araly1|938187|scaffold_502378.1 Length=1168 Score = 1912 bits (1035), Expect = 0.0 Identities = 1116/1153 (97%), Gaps = 14/1153 (1%) Strand=Plus/Plus Query 165 GAAAATCCTTCTTCTGCTTAATGCTGCTAGATATGGATCTCGGTGTTCTTCT----TC-C 219 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1 GAAAATCCTTCTTCTGCTTAATGCTGCTAGATATGGATCTCGGTGTTCTTCTACCATCTC 60 Query 220 --A-----TCATTGCAATCTGTTTATGTGCTGGTGTTTTACTTCGTTTACTTGGCCGTTG 272 | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTATTCCCTCATTGCAATCTGTTTATGTGCTGGTGTTTTACTTCGTTTACTTGGCCGTTG 120 Query 273 CCGGAGAAATTCTCCCCGGGAAAGTTATTCGCGGCGTCCTTTTATCAGATGGCTCTCAAC 332 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 CCGGAGAAATTCTCCCCGGGAAAGTTATTCGCGGCGTTCTTTTATCAGATGGCTCTCAAC 180 Query 333 TTCGTTACCGATGCAATGGTCTATTGGCACTAATATTGTTGGTAGCTATTTTGGGAATCT 392 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 181 TTCGTTACCGATGCAATGGTCTATTGGCATTAACATTGTTGGTAGCTATTTTGGGAATCT 240 Query 393 GTGCAAAACTTGGCATTGTATCACCTCTTGTGGTTGCGGATAGAGGACTTGAGTTACTCT 452 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 GTGCAAAACTTGGCATTGTATCACCTCTTGTGGTTGCGGATAGAGGACTTGAGCTACTCT 300 Query 453 CAGCTACTTTTATTTTCTGTGTTTTGGTGACATTAGCATTGTATGTTACTGGGCGAAGTT 512 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 301 CTGCTACTTTTATTTTCTGTGTTTTGGTGACATTAGCATTGTATGTTACTGGGCGAAATT 360 Query 513 CCT-CGAATAAGGGTTCTTCCCTAAAGCCTCATGTCTCAGGAAATCTTGTACATGACTGG 571 | | || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 CTTCCG-ATAAGAGTTCTTCCCTAAAGCCTCATGTCTCAGGAAATCTTGTACATGATTGG 419 Query 572 TGGTTTGGAATACAGCTGAATCCTCAGTTTATGAGCATTGATCTCAAGTTTTTCTTTGTC 631 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 TGGTTTGGAATACAGTTGAATCCTCAGTTTATGAGCATCGATCTCAAGTTTTTCTTTGTC 479 Query 632 AGAGCCGGGATGATGGGATGGCTGCTTATCAATCTCTCTATTCTGGCAAAAAGTGTGCAG 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGAGCCGGGATGATGGGATGGCTGCTTATCAATCTCTCTATTCTGGCAAAAAGTGTGCAG 539 Query 692 GATGGTTCCTTGAGTCAGTCGATGATTCTTTACCAGATCTTCTGTGCGTTATATATATTG 751 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 540 GATGGTTCCTTGAGTCAGTCGATGATTCTTTACCAGATTTTCTGTGCGTTATATATATTG 599 Query 752 GACTACTTTGTTCATGAAGAATACATGACCTCTACGTGGGACATAATTGCAGAGAGACTA 811 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GACTACTTTGTTCATGAAGAATACATGACCTCTACGTGGGACATAATTGCAGAGAGACTG 659 Query 812 GGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGGC 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGGC 719 Query 872 TGGTGGCTTTTGCACAACAAAGTAGAACTAACAGTTCCTGCGATTGTAGTCAATTGCCTT 931 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 720 TGGTGGCTTTTGCACAACAAAGTAGAACTAACAGTTCCTGCTATTGTAGCCAATTGCCTT 779 Query 932 GTCTTCTTGATAGGGTACATGGTTTTTCGAGGAGCTAACAAACAAAAACATATCTTTAAG 991 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 780 GTCTTCGTGATAGGGTACATGGTTTTTCGAGGGGCTAACAAACAAAAACATATCTTTAAG 839 Query 992 AAGAACCCAAAAACACCAATATGGGGCAAGCCTCCAGTGGTAGTTGGTGGAAAGTTACTG 1051 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AAGAACCCAAAAACACCTATATGGGGCAAGCCTCCAGTGGTAGTTGGTGGAAAGTTACTG 899 Query 1052 GTTTCAGGCTATTGGGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCT 1111 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GCTTCAGGCTATTGGGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCT 959 Query 1112 CTGTCCTTCAGTTTGCCATGTGGAATAAGTTCTCCGGTTCCATATTTCTACCCGATATAC 1171 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 960 CTGTCCTTCAGTTTGCCCTGTGGAATAAGTTCTCCGGTTCCATATTTCTACCCAATATAT 1019 Query 1172 CTTCTGATACTATTGATATGGAGAGAACGAAGAGACGAGGTTCGATGTGCAGAGAAGTAC 1231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CTTCTGATACTATTGATATGGAGAGAACGAAGAGACGAGGTTCGATGTGCAGAGAAGTAC 1079 Query 1232 AAGGAGATATGGGCAGAGTATCTTAGACTTGTCCCCTGGAGAATACTTCCTTATGTTTAT 1291 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AAGGAGATCTGGGCAGAGTATCTTAGACTTGTCCCCTGGAGAATACTTCCTTATGTTTAT 1139 Query 1292 TAGATGTGCCAAG 1304 ||||||||||||| Sbjct 1140 TAGATGTGCCAAG 1152 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54811862555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5