BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52940.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938187 jgi|Araly1|938187|scaffold_502378.1 1912 0.0
> Ahg938187 jgi|Araly1|938187|scaffold_502378.1
Length=1168
Score = 1912 bits (1035), Expect = 0.0
Identities = 1116/1153 (97%), Gaps = 14/1153 (1%)
Strand=Plus/Plus
Query 165 GAAAATCCTTCTTCTGCTTAATGCTGCTAGATATGGATCTCGGTGTTCTTCT----TC-C 219
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 GAAAATCCTTCTTCTGCTTAATGCTGCTAGATATGGATCTCGGTGTTCTTCTACCATCTC 60
Query 220 --A-----TCATTGCAATCTGTTTATGTGCTGGTGTTTTACTTCGTTTACTTGGCCGTTG 272
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATTCCCTCATTGCAATCTGTTTATGTGCTGGTGTTTTACTTCGTTTACTTGGCCGTTG 120
Query 273 CCGGAGAAATTCTCCCCGGGAAAGTTATTCGCGGCGTCCTTTTATCAGATGGCTCTCAAC 332
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CCGGAGAAATTCTCCCCGGGAAAGTTATTCGCGGCGTTCTTTTATCAGATGGCTCTCAAC 180
Query 333 TTCGTTACCGATGCAATGGTCTATTGGCACTAATATTGTTGGTAGCTATTTTGGGAATCT 392
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 181 TTCGTTACCGATGCAATGGTCTATTGGCATTAACATTGTTGGTAGCTATTTTGGGAATCT 240
Query 393 GTGCAAAACTTGGCATTGTATCACCTCTTGTGGTTGCGGATAGAGGACTTGAGTTACTCT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GTGCAAAACTTGGCATTGTATCACCTCTTGTGGTTGCGGATAGAGGACTTGAGCTACTCT 300
Query 453 CAGCTACTTTTATTTTCTGTGTTTTGGTGACATTAGCATTGTATGTTACTGGGCGAAGTT 512
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 CTGCTACTTTTATTTTCTGTGTTTTGGTGACATTAGCATTGTATGTTACTGGGCGAAATT 360
Query 513 CCT-CGAATAAGGGTTCTTCCCTAAAGCCTCATGTCTCAGGAAATCTTGTACATGACTGG 571
| | || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CTTCCG-ATAAGAGTTCTTCCCTAAAGCCTCATGTCTCAGGAAATCTTGTACATGATTGG 419
Query 572 TGGTTTGGAATACAGCTGAATCCTCAGTTTATGAGCATTGATCTCAAGTTTTTCTTTGTC 631
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 TGGTTTGGAATACAGTTGAATCCTCAGTTTATGAGCATCGATCTCAAGTTTTTCTTTGTC 479
Query 632 AGAGCCGGGATGATGGGATGGCTGCTTATCAATCTCTCTATTCTGGCAAAAAGTGTGCAG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGCCGGGATGATGGGATGGCTGCTTATCAATCTCTCTATTCTGGCAAAAAGTGTGCAG 539
Query 692 GATGGTTCCTTGAGTCAGTCGATGATTCTTTACCAGATCTTCTGTGCGTTATATATATTG 751
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 GATGGTTCCTTGAGTCAGTCGATGATTCTTTACCAGATTTTCTGTGCGTTATATATATTG 599
Query 752 GACTACTTTGTTCATGAAGAATACATGACCTCTACGTGGGACATAATTGCAGAGAGACTA 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACTACTTTGTTCATGAAGAATACATGACCTCTACGTGGGACATAATTGCAGAGAGACTG 659
Query 812 GGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGGC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGGC 719
Query 872 TGGTGGCTTTTGCACAACAAAGTAGAACTAACAGTTCCTGCGATTGTAGTCAATTGCCTT 931
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 720 TGGTGGCTTTTGCACAACAAAGTAGAACTAACAGTTCCTGCTATTGTAGCCAATTGCCTT 779
Query 932 GTCTTCTTGATAGGGTACATGGTTTTTCGAGGAGCTAACAAACAAAAACATATCTTTAAG 991
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GTCTTCGTGATAGGGTACATGGTTTTTCGAGGGGCTAACAAACAAAAACATATCTTTAAG 839
Query 992 AAGAACCCAAAAACACCAATATGGGGCAAGCCTCCAGTGGTAGTTGGTGGAAAGTTACTG 1051
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGAACCCAAAAACACCTATATGGGGCAAGCCTCCAGTGGTAGTTGGTGGAAAGTTACTG 899
Query 1052 GTTTCAGGCTATTGGGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCT 1111
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCTTCAGGCTATTGGGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCT 959
Query 1112 CTGTCCTTCAGTTTGCCATGTGGAATAAGTTCTCCGGTTCCATATTTCTACCCGATATAC 1171
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 CTGTCCTTCAGTTTGCCCTGTGGAATAAGTTCTCCGGTTCCATATTTCTACCCAATATAT 1019
Query 1172 CTTCTGATACTATTGATATGGAGAGAACGAAGAGACGAGGTTCGATGTGCAGAGAAGTAC 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTCTGATACTATTGATATGGAGAGAACGAAGAGACGAGGTTCGATGTGCAGAGAAGTAC 1079
Query 1232 AAGGAGATATGGGCAGAGTATCTTAGACTTGTCCCCTGGAGAATACTTCCTTATGTTTAT 1291
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAGGAGATCTGGGCAGAGTATCTTAGACTTGTCCCCTGGAGAATACTTCCTTATGTTTAT 1139
Query 1292 TAGATGTGCCAAG 1304
|||||||||||||
Sbjct 1140 TAGATGTGCCAAG 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5