BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52950.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485669 jgi|Araly1|485669|fgenesh2_kg.5__1661__AT3G52950.1 3127 0.0
> Ahg485669 jgi|Araly1|485669|fgenesh2_kg.5__1661__AT3G52950.1
Length=2100
Score = 3127 bits (1693), Expect = 0.0
Identities = 1879/1969 (95%), Gaps = 11/1969 (1%)
Strand=Plus/Plus
Query 1 GGAAACAGGAACAACCAATGAAAACTCGATAAATGGCTTAACTCAATTGTTAAGAGCCGT 60
||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1 GGAAACAAGAACAACCAATGAAAATTCGATAAATGGCTGAACACAATTGTTAAGAGCCGT 60
Query 61 TTGTTTTTTGGCAACAAAAGTGCTCgaga-gagagaccttgaagaagaaagaagaagaga 119
||| ||||||||||||||||||||||||| || ||| ||||||||| | ||||||||||
Sbjct 61 TTG-TTTTTGGCAACAAAAGTGCTCGAGACGA-AGAGGTTGAAGAAG-AGGAAGAAGAGA 117
Query 120 CGAGTTTGATATCTAAAGGAATCATTTTTGACGGATTTAGGATCTAAGTAAACCCTAGAT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 118 CGAGTTTGATATCTAAAGGAATCATTTTTGACGGATTTAGGATCTAAGAAAACCCTAGAT 177
Query 180 TGACCGAATATGAGTACTCAAGCGACGGGTCCTTCTTCAACATCAGGGAGGAGAAGCAAT 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 TGATTGAATATGAGTACTCAAGCGACGGGTCCTTCTTCAACATCAGGGAGGAGAAGCACT 237
Query 240 TCTACTGTACGGCGAGGACCACCACCTTCTAAGAAACCAGTACAATCAGAGAATGGAAGT 299
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 238 TCTAGTGTACGGCGAGGACCACCACCTTCTAAGAAACCAGTCCAATCAGAGAACGGAAGT 297
Query 300 GTTAATGGGAACACCTCAAAACCCAATTCACCTCCTCCTCAACCTCAATCTCAAGCTCCT 359
|| ||||| |||||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct 298 GTCAATGGTAACACCTCTAAACCCAATTCACCTCCTCCGCAACCTCCATCTCAAGCTCCT 357
Query 360 TCTAATGGAGAGAGAACAGTGAAGAAGCTTAGGTTATCGAAAGCTCTTACTATTCCTGAA 419
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 358 TCTAATGGAGAGAGAACAGTGAAGAAGCTTCGGTTATCGAAAGCTCTCACTATTCCTGAA 417
Query 420 GGAACTACTGTTTTCGATGCTTGTCGAAGAATGGCTGCTAGGCGTGTTGATGCTTGTTTG 479
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 418 GGAACTACTGTTTTCGATGCTTGTCGAAGGATGGCGGCTCGGCGTGTTGATGCTTGTTTG 477
Query 480 TTGACTGATTCAAGTGCGCTTCTTTCCGGGATTGTTACTGATAAAGATGTAGCTACAAGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 TTGACTGATTCAAGTGCGCTTCTTTCCGGGATTGTTACTGATAAAGATGTTGCTACAAGA 537
Query 540 GTGATTGCTGAAGGGTTGAGACCGGATCAAACTTTGGTCTCTAAGGTTATGACTAGGAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGATTGCTGAAGGGTTGAGACCGGATCAAACTTTGGTCTCTAAGGTTATGACTAGGAAT 597
Query 600 CCTATTTTTGTTACTTCTGATTCGTTGGCGCTTGAGGCTCTTCAGAAGATGGTTCAAGGG 659
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCTATTTTTGTCACGTCTGATTCGTTGGCGCTTGAGGCTCTTCAGAAGATGGTTCAAGGG 657
Query 660 AAGTTTAGACACTTGCCTGTTGTGGAGAATGGTGAAGTCATTGCTTTGTTGGATATTACA 719
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 AAATTTAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTTTGTTGGATATTACA 717
Query 720 AAGTGTTTGTATGATGCTATTTCTAGGATGGAGAAAGCTGCAGAGCAAGGTAGTGCTTTA 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 AAGTGTTTGTATGATGCTATTTCTAGGATGGAGAAAGCTGCAGAGCAAGGCAGTGCTTTA 777
Query 780 GCTGCTGCAGTGGAAGGTGTGGAGAAGCAATGGGGAAGCGGATATTCTGCACCGTATGCT 839
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 778 GCAGCTGCAGTGGAAGGTGTGGAGAAGCAATGGGGAAGCGGATATTCTGCGCCCTATGCT 837
Query 840 TTCATTGAAACCTTGAGGGAGAGAATGTTTAAACCCGCCTTGTCAACGATTATTACAGAC 899
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 838 TTCATTGAAACCTTGAGGGAGAGAATGTTTAAGCCCGCCTTGTCAACGATTATCACAGAA 897
Query 900 AATTCGAAGGTTGCACTTGTAGCACCATCAGATCCTGTTTCAGTTGCTGCGAAAAGGATG 959
||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 898 AATTCAAAGGTTGCACTTGTAGCACCATCAGATCCTGTTAGTGTTGCTGCGAAACGGATG 957
Query 960 AGGGATTTGCGGGTTAACTCTGTAATCATTTCCACGGGGAACAAAAT-CAGTGGAATCTT 1018
| |||||||||||||||||||| |||||||||| ||||||||| || || |||||||||
Sbjct 958 CGAGATTTGCGGGTTAACTCTGTTATCATTTCCATGGGGAACAAGATCCA-TGGAATCTT 1016
Query 1019 GACTTCAAAGGACATTCTGATGCGAGTGGTGGCACAAAATTTATCTCCTGAATTGACTCT 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1017 GACTTCAAAGGACATTCTGATGCGAGTGGTGGCACAAAATTTACCTCCTGAATTGACTCT 1076
Query 1079 TGTCGAGAAGGTAATGACACCGAATCCTGAATGTGCATCGCTAGAGACAACGATTCTGGA 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGTTGAGAAGGTAATGACACCGAATCCTGAATGTGCATCGCTAGAGACAACGATTCTGGA 1136
Query 1139 TGCGTTGCATACAATGCATGATGGAAAGTTTCTACATCTTCCAATTATAGATAAAGATGG 1198
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1137 TGCGTTGCATATAATGCATGATGGGAAGTTTCTACATCTTCCAATTATAGATAAAGACGG 1196
Query 1199 ATCAGCTGCAGCTTGTGTAGACGTTCTTCAGATTACTCACGCAGCTATTTCAATGGTGGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 ATCAGCTGCAGCTTGTGTAGACGTTCTTCAGATTACTCACGCAGCTATTTCAATGGTCGA 1256
Query 1259 GAACAGTTCTGGAGCTGTAAATGATATGGCAAACACGATGATGCAGAAATTTTGGGATTC 1318
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1257 GAACAGTTCTGGAGCTGTGAATGATATGGCGAACACGATGATGCAGAAATTCTGGGATTC 1316
Query 1319 AGCTCTTGCGTTAGAGCCACCTGATGATTCTGACACTCAAAGTGAAATGTCGGCAATGAT 1378
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGCTCTTGCGTTAGAGCCACCAGATGATTCTGACACTCAAAGTGAAATGTCGGCAATGAT 1376
Query 1379 GCATCATTCAGATATAGGGAAGCTCAGTTCTTACCCATCTCTAGGACTAGGGAATTCGTT 1438
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1377 GCATCATTCAGATATAGGGAAGCTCAGTTCTTACCCATCTCTAGGACTCGGGAATTCATT 1436
Query 1439 TTCGTTCAAATTTGAAGACCTTAAGGGCCGTGTACATCGGTTTACTTCTGGAGCTGAAAA 1498
||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1437 TTCATTCAAATTCGAAGACCTTAAGGGCCGTGTACATCGGTTTACTTCCGCAGCTGAAAA 1496
Query 1499 CCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAATTGGCAGCGACAATAACAATGTGGA 1558
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1497 CCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAATTGGCAGCGACAACAATGATGTGGA 1556
Query 1559 ACAACGGCCTCAGATTATATATGAGGACGATGAAGGTGATAAGGTTTTGATTACATCGGA 1618
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1557 ACAACGGCCTCAGATTATATATGAGGACGATGAAGGTGATAAGGTATTGATTACATCGGA 1616
Query 1619 TAGCGATTTGGTTGGTGCTGTTACTCTTGCTAGGTCTACAGGACAAAAGGTTTTGAGGCT 1678
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 CAGCGATTTGGTTGGTGCTGTTACTCTTGCTAGATCTACAGGACAAAAGGTTTTGAGGCT 1676
Query 1679 GCATCTGGACTTCACTGAGTCAACAAGGAGCTTGAGCTCAGAAACCACCCAACTCAAGAA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GCATCTGGACTTCACTGAGTCAACAAGGAGCTTGAGCTCAGAAACCACCCAACTCAAGAA 1736
Query 1739 AGGTGATTCTCGAGACAGAGGAAGCGGATGGGTTTCATGGCGTGGTGGTGTGGTGGTTAC 1798
||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AGGGGATTCTAGAGATAAAGGAAGCGGATGGGTTTCATGGCGTGGTGGTGTGGTGGTTAC 1796
Query 1799 AGGAGCTGTTGTCCTAACAAGCATAGCCATAGTTGTTTACTTGAAGCGTTCAAAGAACTG 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1797 AGGAGCTGTTGTCCTAACAAGCATAGCCATAGTTGTTTACTTGAAGCGTTCAAAGATCTG 1856
Query 1859 ATTTTTGCTGAAGCAAACTGTTTGGGATGCAGAACAAAAACTCTTTTTCTCTTAATTTTT 1918
||||||||||||||||||||||| ||| ||||||||||| || ||||||| || |||||
Sbjct 1857 ATTTTTGCTGAAGCAAACTGTTTTGGAGGCAGAACAAAA-CTTTTTTTCT-TTG-TTTTT 1913
Query 1919 TGGTAAGTTTCATACAGTTTGTCTCTT--GTCTTTTGGGGTCACATGTT 1965
||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1914 TGGTAAGTTTCATACAGTTTGTCTCTTTTGTCTTTTGGGGTTACATGTT 1962
Score = 187 bits (101), Expect = 3e-46
Identities = 128/141 (91%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 2000 TTGTTTCCCTATGATATTAAATTAATGGGGAAAAACCTTATTCAGATTACTCTATTTGAC 2059
|||| |||| | ||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 1961 TTGTGTCCCAAAGATATTAAATTAAAGGGGAAAAACCCTATTCAGATTAGTCAATTTGAC 2020
Query 2060 AGAGTTTATGTAAAACCTCTGAAACCGGGAAAATAAATCAAGGGAATATCATTGCACTGC 2119
||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||| |
Sbjct 2021 AGAGTTTATGTAAAACCTCTGAAACCGAGAAAATAAAACCAGG-AATATCATTGCACTAC 2079
Query 2120 AGATTCTGGTCTTTGATATAA 2140
|||||||||| ||||||||||
Sbjct 2080 AGATTCTGGTATTTGATATAA 2100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5