BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52960.1
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485670 jgi|Araly1|485670|fgenesh2_kg.5__1662__AT3G52960.1 1205 0.0
> Ahg485670 jgi|Araly1|485670|fgenesh2_kg.5__1662__AT3G52960.1
Length=825
Score = 1205 bits (652), Expect = 0.0
Identities = 792/854 (93%), Gaps = 31/854 (4%)
Strand=Plus/Plus
Query 14 TTCACCTAAACAGCATC-AATGGCGACTTCTCTCTCCGTTTCTAGATTCATGTCCTCCTC 72
||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1 TTCACCTAAACAGCATCAAATGGCGACTTCTCTCTCCGTTTCTAGATTCA--T-CTCCTC 57
Query 73 CGCCACCGTTATCTCCGTCGCTAAGCCGTTACTTTCCCCCACCGTATCCTTCACCGCGCC 132
| || ||| || |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 58 CTCCTCCG------CCATCGCTAAGCCGTTACTATCCCCCACCGTCTCCTTCACCGCGCC 111
Query 133 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCTCTCAAATTCCGCAACCGCCGCAC 192
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 112 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCCCTCAAATTCCGCAACCGCCGCAC 171
Query 193 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCTACGACACCCGTCACCGCCTCCATTTC 252
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 172 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCCACAACACCCGTCACCGCCTCCATTTC 231
Query 253 CGTCGGAGACAAGCTCCCAGACTCCACTCTCTCCTACCTCGATCCATCCACCGGAGACGT 312
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 232 CGTCGGAGACAAGCTCCCAGACTCCACCCTCTCCTACCTCGATCCATCCACCGGAGACGT 291
Query 313 CAAAACAGTAACCGTCTCATCCCTAACCGCCGGGAAGAAAACAATCCTATTCGCCGTTCC 372
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 292 CAAAACCGTAACCGTCTCATCCCTAACCGCCGGAAAGAAAACAATCCTATTCGCCGTACC 351
Query 373 CGGCGCATTCACACCAACATGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCCGG 432
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 352 CGGAGCATTCACACCAACCTGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCTGG 411
Query 433 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTCGT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTTGT 471
Query 493 GATGGAAGCGTGGAGGAAAGATCTTGGAATTAACGATGAGGTAATGTTGCTATCCGATGG 552
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 472 CATGGAAGCGTGGAGGAAAGATCTCGGAATCAACGATGAGGTAATGTTGCTTTCCGATGG 531
Query 553 AAATGGCGAATTCACAGGGAAGCTTGGTGTTGAATTGGATTTGAGGGATAAGCCTGTGGG 612
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 532 TAACGGTGAATTCACAGGGAAGCTTGGAGTTGAATTGGATTTGAGGGATAAGCCTGTAGG 591
Query 613 ACTTGGAGTTAGGTCAAGGAGATATGCGATTTTGGCTGATGATGGTGTTGTGAAAGTTCT 672
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 592 ACTTGGAGTTAGGTCAAGAAGATATGCGATATTGGCTGATGATGGTGTTGTGAAAGTTCT 651
Query 673 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 711
Query 733 CTGATTCTTATGATTTTCTCATCAATTTCGTCT-TCTTCTCTGTTTTGAATTTTCTTTAC 791
||||||||| | || || || || | ||| | ||| | |||| |||| |||
Sbjct 712 CTGATTCTT-TC-TT--CT--TC--TT-C-TCTGT-TTCGAT-TTTT---TTTT-TTT-- 753
Query 792 TCTGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCATTATCGGATTTGTAATGGAATA 851
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 754 T-TGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCAT-ATCGGATTTGTAATGGAATA 811
Query 852 ATGAAGTTAGAGGT 865
||||| ||||||||
Sbjct 812 ATGAATTTAGAGGT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35339944059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5