BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52970.2
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348388 jgi|Araly1|348388|fgenesh1_pg.C_scaffold_5001780 1587 0.0
> Ahg348388 jgi|Araly1|348388|fgenesh1_pg.C_scaffold_5001780
Length=1551
Score = 1587 bits (859), Expect = 0.0
Identities = 980/1039 (94%), Gaps = 6/1039 (1%)
Strand=Plus/Plus
Query 577 GTACAAAAACAATCGATGTGGGGAGATATTTCTTCTTGATGGCATTTAATCTCATAGGAA 636
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 512 GTACAAAAACAATCGACGTGGGGAGATATTTCTTCTTGATGGCGTTTAATCTCATAGGAA 571
Query 637 ACCTCATGTTCTCGAGAGATTTGCTTGATCCTGATTCAAAAAGAGGATCCGAATTCTTTT 696
||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 572 ACCTCATGTTCTCGAGAGATTTGCTCGATCCCGATTCAAAAAGAGGCTCCGAATTCTTCT 631
Query 697 ACCACACCGGGAAAGTGATGGAGTTCGCCGGAAAACCAAACGTTGCCGATTTCTTCCCGT 756
|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 632 ACCACACCGGAAAAGTGATGGAGTTCGCCGGGAAACCCAACGTTGCCGATTTCTTCCCTT 691
Query 757 TGCTAAGGTTTCTTGACCCTCAAGGAATCAGGAGAAAAACGCAATTCCACGTGGAAAAAG 816
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 692 TGCTAAGGTTTCTTGACCCTCAAGGAATCAGAAGAAAAACGCAGTTCCACGTGGAAAAAG 751
Query 817 CGTTTGAGATCGCCGGAGAGTTCATCAGAGAACGAACGGAGGTTAGGGAGAGAGAAAAGA 876
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 752 CGTTTGAGATCGCCGGAGAGTTCATCAGAGAACGAACGGAAGTTAGGGAGAAAGAAAAGA 811
Query 877 GCGACGAGAAGACGAAAGATTACTTAGATGTTCTTTTGGAGTTTCGTGGTGGCGATGGAG 936
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 812 GCGACGAGAAGACGAAAGATTACTTGGATGTTCTTTTGGAGTTTCGTGGTGGCGATGGAG 871
Query 937 TCGACGAAGAACCTTCTAGCTTCTCATCAAGAGATATCAACGTTATTGTTTTCGAAATGT 996
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 872 TCGACGAAGAACCTTCTAGCTTCTCATCAAGAGATATCAACGTTATTGTTTTTGAAATGT 931
Query 997 TTACGGCTGGAACGGATACGACAACGAGCACGTTGGAGTGGGCACTAGCGGAGCTTCTAC 1056
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 932 TTACGGCTGGAACGGATACAACAACGAGCACGTTGGAATGGGCACTAGCGGAGCTTCTAC 991
Query 1057 ACAACCCAAGAACACTGA-CCAAACTCCAAACCGAACTCCGGACCTACTTCAAGTCCTCG 1115
|||| |||||||| || | |||||||||||||||||||||| || || ||||||||| |
Sbjct 992 ACAATCCAAGAAC-CTTAACCAAACTCCAAACCGAACTCCGAACTTATTTCAAGTCCACA 1050
Query 1116 AACCAAAAGCTCCAAGAAGAAGACCTACCAAACCTTCCCTATCTCTCAGCTGTTATCATG 1175
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1051 AACCAAAAGCTCCAAGAAGAAGACCTTCCAAACCTTCCCTATCTCTCGGCGGTTATCATG 1110
Query 1176 GAAACCTTAAGGCTACACCCACCTCTGCCTTTCCTCGTCCCACACAAAGCCATGTCAACT 1235
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1111 GAAACCTTAAGGCTGCACCCACCTCTGCCTTTCCTAGTCCCACACAAAGCCATGTCCACG 1170
Query 1236 TGTCACATCTTCGATCAATACACTATCCCCAAGGAAACACAAGTCTTGGTCAATGTATGG 1295
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1171 TGCCACATCTTCGACCAATACACAATCCCCAAAGAAACACAAGTCTTGGTCAATGTATGG 1230
Query 1296 GCCATCGGACGCGATCCTAAAACATGGATCGACCCGATAATGTTCAAACCCGAGAGATTT 1355
||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GCCATAGGGCGCGATCCTGAAACATGGATCGACCCGATAATGTTCAAACCCGAGAGATTT 1290
Query 1356 ATATCCGA-CCCTGA-CGCCCGAGACTTCAAGGGACAAGATTACGAGTTCTTGCCGTTCG 1413
||||| || ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1291 ATATC-GAACCC-GAACGCCCGAGACTTCAAGGGACAGGATTACGAGTTCTTGCCGTTCG 1348
Query 1414 GGTCGGGTCGAAGGATGTGTCCAGCTTTGCCTTTGGCATCACGGGTTTTGCCGTTGGCCA 1473
|||| |||||| |||||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct 1349 GGTCAGGTCGACGGATGTGTCCAGCTTTACCTTTGGCGTCACGGGTCTTGCCATTGGCCA 1408
Query 1474 TTGGGTCAATGGTGAGATCGTTTGATTGGGCTTTAGAAAATGGGCTTAATGCAGAAGAAA 1533
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1409 TTGGGTCGATGGTGAGATCGTTTGATTGGGCTTTAGCAAATGGGCTTAATGCAGAAGAAA 1468
Query 1534 TGGATATGGGAGAAAGGATTGGTATAACATTGAAAAAAGCTGTTCCTTTGGAAGCCATTC 1593
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1469 TGGATATGGGAGAAAGGATCGGTATTACATTGAAAAAGGCTGTTCCTTTGGAAGCGATTC 1528
Query 1594 CAATTCCTTATCGAGGGAC 1612
| |||||||||||||||||
Sbjct 1529 CCATTCCTTATCGAGGGAC 1547
Score = 728 bits (394), Expect = 0.0
Identities = 474/514 (92%), Gaps = 0/514 (0%)
Strand=Plus/Plus
Query 24 ATGATTAATCAATTAACAAAGAACGAGTTAATCGGATTATTTACATCGATTGCCGTCCTC 83
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 1 ATGACTAATCAATTAACGAAGAACGAGTTAATCGGATTATTTACATCCATTGCCCTTCTC 60
Query 84 ATATACGTTACATGTCTCTTCTACACCAAACGATGTCGTACGAGACTACCTCCGGGACCA 143
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 61 ATATACGTTACATGTCTCTTCCACACCAAACGATCTCGTACGAGACTACCTCCGGGACCA 120
Query 144 AATCCATGGCCGGTGATTGGAAACATTTTCCAGCTCGCTGGTTTACCGCCACACGACTCA 203
||||| ||||| ||||| || ||||| ||||||||||| || | ||||||||||||||||
Sbjct 121 AATCCCTGGCCAGTGATCGGCAACATGTTCCAGCTCGCCGGCTCACCGCCACACGACTCA 180
Query 204 TTGACTAAACTTTCACGGCGTCACGGGCCAATCATGACTTTACGGATCGGGTCGATGCTG 263
|||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||
Sbjct 181 TTGACTAAACTTTCACGGCGTCACGGGCCAATCATGTCTTTGCGGATCGCGTCAATGCTG 240
Query 264 ACGGTTGTGATCTCTTCGAGTGAAGTGGCTCGGGAGATCTTCAAGAAGCATGACGCAGCT 323
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 241 ACGGTTGTGATCTCTTCGAGTGAAGTGGCTCGGGAGATTTTCAAGAAGCACGACGCAGTT 300
Query 324 TTGGCTGGCCGGAAGATTTACGAGGCGATGAAAGGAGGGAAGAGTAGTGACGGCTCGCTC 383
||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct 301 TTGGCCGGCCGGAAGATCTACGAGGCGATGAAGGGAGGGAAGAGCAGTGACGGGTCTCTT 360
Query 384 ATCACGGCTCAGTATGGTGCGTATTGGCGGATGCTGCGGAGGCTTTGCACCACTCAGTTC 443
|| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATAACTGCTCAGTATGGAGCGTATTGGCGGATGCTGCGGAGGCTATGCACCACTCAGTTC 420
Query 444 TTTGTCACGCGCCGTCTTGATGCTATGAGTGATGTACGCTCTAGGTGTGTTGATCAGATG 503
||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 421 TTTGTTACTCGCCGTCTTGATGCCATGAGCGATGTACGCTCTAGGTGTGTCGATCAGATG 480
Query 504 CTTCGGTTTGTCGAGGAAGGTGGCCAAAACGGTA 537
||||| |||||||| |||||||||||||||||||
Sbjct 481 CTTCGATTTGTCGAAGAAGGTGGCCAAAACGGTA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5