BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52980.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485672 jgi|Araly1|485672|fgenesh2_kg.5__1664__AT3G52980.1 920 0.0
Ahg480130 jgi|Araly1|480130|fgenesh2_kg.3__2831__AT2G05160.1 510 7e-144
> Ahg485672 jgi|Araly1|485672|fgenesh2_kg.5__1664__AT3G52980.1
Length=1056
Score = 920 bits (498), Expect = 0.0
Identities = 650/720 (90%), Gaps = 23/720 (3%)
Strand=Plus/Plus
Query 408 TCCTGAATTCTCAACTAGTTTCTTCTCTC-AGAAGAAAC-AGAGTTTGTCTTTAAGAACT 465
||||||||||||||||||||||||||||| || |||||| || || | || || ||||||
Sbjct 354 TCCTGAATTCTCAACTAGTTTCTTCTCTCAAG-AGAAACAAG-GTCTATCGTTGAGAACT 411
Query 466 AGTCGAAGATCACTGAGTTTACCAGAGTTTCCTCTCAAAATCTGCCATTACTTCAACAAA 525
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 412 AGTCGAAGATCACTGAGTTTACCGGAGTTTCCTGTAAAAATCTGCCATTACTTCAACAAA 471
Query 526 GGATTCTGCAAACACGGCAACAACTGTCACAACAACCTAAGCGACGAAGAGCATGTTGTT 585
|| || |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 472 GGGTTTTGCAAACACGGCAACAACTG-----------T-AGCGATGAAGAGCATGTTGTT 519
Query 586 TCCCCTGGATCACTTGAGAAGCTAGAAAGAGAGATCATTGAGCTGCTTAAATCAAGAAGA 645
||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 520 TCCGCTGTATCACTTGAGAAGCTAGAAAGAGAGATCATTTACCTGCTTAAATCAAGAAGA 579
Query 646 GGTGCTCCAATTTCCATAGCATT-TTTGCCAATGATGTACCACGAGAAGTATGGTAGGAG 704
|||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 580 GGTGCTCCAATTTCCATAGC-TTCTTTGCCAATGATGTACTACGAGAAGTATGGTAGGAC 638
Query 705 TCTTCAAGCTGAAGGATATCTCACAGAGTCACAAAGACATGGCAAAGCTGGTTTTAGCCT 764
||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 639 TCTTCAAGCTGAAGGCTATCTCACTGAGTCACAAAGACATGGCAAAGCTGGCTATAGCCT 698
Query 765 CACCAAGCTTCTTGCTCGCTTAAAGAACACCATCCGCCTCATCGACAGGCCTCATGGACA 824
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 699 CACCAAGCTTCTTGTTCGCTTAAAGAACACCATCCGCCTCATCGACAGGCCTCATGGGCA 758
Query 825 ACATTCAGTTATACTAGCTGAAGATGTATCAAAGTTTGTGGAATATACGGGAGAGAGAAG 884
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 759 ACATTCAGTAATACTAGCAGAAGATGTATTAAAGTTTGTGGAATATACGGGAGAGAAAAG 818
Query 885 CGAACATGGAGCAATC-TTAGCTGGTTCAAGGCAGGTTTACTTGACATTTCCGGCAGAGA 943
|||||| ||||| ||| || ||||| || || ||| ||||||| ||||||||||| ||||
Sbjct 819 CGAACACGGAGCGATCCTT-GCTGGCTCGAGACAGATTTACTTAACATTTCCGGCGGAGA 877
Query 944 GTAGTTTCACTGAACATGACGTTTCAAACTACTTCTCTGAAGTTGGACCAGTGGAAGATG 1003
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 878 GTAGTTTCACTGAACATGATGTTTCAAACTATTTCTCCAAAGTTGGACCAGTGGAAGATG 937
Query 1004 TAAGAATTCCATGTCAACAAAAGAGAATGTATGGATTTGTAACTTTTGTTTATATGGAA- 1062
| || ||||||||||||||||||||||||| ||||||||||||||||| ||| | |||
Sbjct 938 TGAGGATTCCATGTCAACAAAAGAGAATGTTTGGATTTGTAACTTTTGCTTACACAGAAG 997
Query 1063 ACCGTCAAACGCATTCTTGCTAAAG-CAATCCTCATTTCATATGCGGAGCACGTGTTCTC 1121
|| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 998 AC-GTCAAACACATTCTTGCTAAAGGCAATCCTCATTTCGTATGCGGAGCACGTGTTCTC 1056
Score = 468 bits (253), Expect = 4e-131
Identities = 323/356 (91%), Gaps = 7/356 (2%)
Strand=Plus/Plus
Query 19 ATGAATGTTGTGCACAACAGAATCCATCAACTTGAACCAGAGAATGCATCGAAGATCATA 78
||||||| |||||| |||||||| || |||||||||||||||||||||| ||||||| |
Sbjct 1 ATGAATGATGTGCAAAACAGAATTCACCAACTTGAACCAGAGAATGCATTGAAGATCGTC 60
Query 79 GGTTATCTCTTGTTGATGCAAGATCAAAACGACCGTGACATGATACGTCTCGCATTCTGT 138
||||||||||||||||||||| | || ||||||||||||||||| |||||||||||||||
Sbjct 61 GGTTATCTCTTGTTGATGCAACACCACAACGACCGTGACATGATTCGTCTCGCATTCTGT 120
Query 139 CCAGATTCGGTGATGCGTTCTATGATCAACTGTGTTAAATGTGAATTGGCTAAAAACTCT 198
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 121 CCAGATTCGGTGATGCGTTCCATGATCAACTGTGTTAAATATGAATTGGCTAATAACTCT 180
Query 199 CATTACAATAACATCCCTTCTTCTGATCACATTCAAATCCGTAAATTCGGATCATT-ATC 257
|||| | | ||| ||| ||||||||||||||||| ||||||||||||||||||| | |
Sbjct 181 CATTGCGA---CATTCCTACTTCTGATCACATTCAAGTCCGTAAATTCGGATCATTCA-C 236
Query 258 CGGTTCATCAAACCAATCTCTTTTGGTTTCTGCCTCTCCTCCTTCGGTTCTCTCTATGGG 317
|||||||||||||||||| |||||||| ||| |||||||||||| |||||||| |||||
Sbjct 237 CGGTTCATCAAACCAATCCCTTTTGGTGTCTATCTCTCCTCCTTCTGTTCTCTCCATGGG 296
Query 318 AACAAGTTTTTGGGAGAATACAAACGATATGGATTCATCATTG-AAAGACAATGTT 372
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 297 AACAAGTTTTTGGGAGAATACAAACGACATGGATTCATCATTGCAAA-ACAATGTT 351
> Ahg480130 jgi|Araly1|480130|fgenesh2_kg.3__2831__AT2G05160.1
Length=2034
Score = 510 bits (276), Expect = 7e-144
Identities = 379/428 (89%), Gaps = 9/428 (2%)
Strand=Plus/Plus
Query 554 ACAACAACCTAAGCGACGAAGAGCATGTTGTTTCCCCTGGATCACTTGAGAAGCTAGAAA 613
|||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 590 ACAACAACCTAAATGAAGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAG 649
Query 614 GAGAGATCATTGAGCTGCTTAAATCAAGAAGAGGTGCTCCAATTTCCATAGCATT-TTTG 672
|||||||||| ||| |||| ||| ||||||||||||||||||| |||||||| || |||
Sbjct 650 GAGAGATCATCGAGTTGCTCAAAGCAAGAAGAGGTGCTCCAATCTCCATAGC-TTCATTG 708
Query 673 CCAATGATGTACCACGAG-AA-GTATGGTAGGAGTCTTCAAGCTGAAGGATATCTCACAG 730
|| |||||||| || | | || || ||||||| ||||||||||||||||||| | ||||
Sbjct 709 CCGATGATGTA-CA-GTGAAACATACGGTAGGACTCTTCAAGCTGAAGGATATTTAACAG 766
Query 731 AGTCACAAAGACATGGCAAAGCTGGTTTTAGCCTCACCAAGCTTCTTGCTCGCTTAAAGA 790
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 767 AGTCACAACGACATGGCAAAGCTGGCTATAGCCTCACCAAGCTTCTTGCTCGCTTGAAGA 826
Query 791 ACACCATCCGCCTCATCGACAGGCCTCATGGACAACATTCAGTTATACTAGCTGAAGATG 850
||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||
Sbjct 827 ACACCATCCGCCTCATCGACAGGCCTCATGGGCAGCATTCAGTTATATTAGCAGAAGATG 886
Query 851 TATCAAAGTTTGTGGAATATACGGGAGAGAGAAGCGAACATGGAGCAATC-TTAGCTGGT 909
|||||||||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||
Sbjct 887 CATCAAAGTTTGTGGAATACACGGGAGAGAGAAACGAACACGGAGCGATCCTT-GCTGGT 945
Query 910 TCAAGGCAGGTTTACTTGACATTTCCGGCAGAGAGTAGTTTCACTGAACATGACGTTTCA 969
|| || ||| ||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct 946 TCTAGACAGATTTACTTAACATTTCCGGCAGAGAGCAGTTTCACTGAACATGATGTCTCC 1005
Query 970 AACTACTT 977
| ||||||
Sbjct 1006 A-CTACTT 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5