BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52990.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938193 jgi|Araly1|938193|scaffold_502384.1 2715 0.0
Ahg934288 jgi|Araly1|934288|scaffold_402276.1 1953 0.0
> Ahg938193 jgi|Araly1|938193|scaffold_502384.1
Length=1624
Score = 2715 bits (1470), Expect = 0.0
Identities = 1574/1625 (97%), Gaps = 3/1625 (0%)
Strand=Plus/Plus
Query 167 TCCACTTCCGTCACCGAAGATGCATTCCAGTCATCTTCTTCTCGAGGAGCCGATCAGGAT 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCCACTTCCGTCACCGAAGATGCATTCCAGTCATCTTCTTCTCGAGGAGCCGATCAGGAT 61
Query 227 GGCTTCAATCCTCGAGCCTTCCAAATCTAGTTTCTTCCCGGCATTGACTAAGATCGTCGG 286
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GGCTTCAATCCTTGAGCCTTCCAAATCTAGTTTCTTCCCGGCATTGACTAAGATCGTCGG 121
Query 287 AACTCTAGGTCCTAAATCCCGATCCGTCGAGGCTCTCTCCGGCTGTCTCAAAGCCGGCAT 346
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACTCTCGGTCCTAAATCCCGATCCGTCGAGGCTCTCTCCGGCTGTCTCAAAGCCGGCAT 181
Query 347 GTCTGTGGCTCGATTTGATTTCTCGTGGGGAGATGCTGATTATCACCAGGAGACACTTGA 406
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 GTCTGTGGCTCGATTCGATTTCTCTTGGGGAGATGCTGATTATCACCAGGAGACACTTGA 241
Query 407 TAATTTGAAAGTTGCTGTGAGGAGCACTAAGAAGCTTTGTGCTGTTATGCTTGATACTGT 466
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TAATCTCAAGGTTGCTGTGAGGAGCACTAAGAAGCTTTGTGCTGTTATGCTTGATACTGT 301
Query 467 TGGACCTGAGCTACAAGTTATTAACAAATCTGAGAAAGCTATTACTTTGAAAGCTGATGG 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGGACCTGAGCTACAAGTTATTAACAAATCTGAGAAAGCTATTACTTTGAAAGCTGATGG 361
Query 527 CCTTGTAACTTTGACACCGAATCAAGATCAAGAAGCTTCTTCTGAAGTTCTTCCCATTAA 586
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 362 CCTTGTAACTTTGACGCCCAATCAAGACCAAGAAGCTTCTTCTGAAGTTCTTCCCATTAA 421
Query 587 TTTCAATGGACTTGCCAAGGCAGTGAAGAAAGGAGACACCATCTTCGTTGGGCAATACCT 646
||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 422 TTTCAGTGGGCTTGCCAAGGCAGTGAAGAAAGGAGACACTATCTTTGTTGGGCAATACCT 481
Query 647 ATTCACTGGTAGTGAAACAACTTCAGTTTGGCTCGAGGTTGATGAAGTTAAAGGAGATGA 706
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 482 CTTCACTGGTAGTGAAACAACTTCAGTTTGGCTTGAGGTTGATGAAGTGAAAGGAGATGA 541
Query 707 TGTCATTTGCCTTTCAAGGAATGCTGCTACTCTGGCTGGTTCTTTGTTCACTTTACACT- 765
|||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 542 TGTCATTTGCCTGTCAAGGAATGCTGCTACTCTGGCTGGTTCTCTATTCACTTTACA-TG 600
Query 766 CCTCTCAAGTTCACATTGATCTCCCAACGCTTACAGAGAAGGATAAGGAGGTTATAAGCA 825
||||||||||||| || ||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 601 CCTCTCAAGTTCATATCGATCTGCCAACTCTCACAGAGAAGGATAAGGAGGTTATAAGCA 660
Query 826 CATGGGGAGTTCAAAATAAAATCGATTTTCTCTCATTGTCTTATTGTCGTCATGCTGAGG 885
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 661 CATGGGGAGTTCAAAATAAAATCGATTTTCTCTCGTTGTCTTATTGTCGTCATGCGGAGG 720
Query 886 ATGTTCGCCAGACCCGTGAAATGCTTAAAAAGTTGGGCGACCTCTCTCAAACACAAATAT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGTTCGCCAGACCCGTGAAATGCTTAAAAAGTTGGGCGACCTCTCTCAAACACAAATAT 780
Query 946 TTGCTAAGATTGAGAACGTAGAGGGACTAACCCACTTCGATGAGATTCTACAAGAAGCTG 1005
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGCTAAGATTGAGAATGTAGAGGGACTAACCCACTTCGATGAGATTCTACAAGAAGCTG 840
Query 1006 ATGGCATTATTCTTTCTCGTGGGAATTTGGGTATAGATTTACCCCCGGAAAAGGTGTTTT 1065
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 841 ATGGCATTATTCTTTCTCGTGGTAATTTGGGTATAGATTTACCCCCAGAAAAGGTGTTTT 900
Query 1066 TGTTTCAAAAGGCTGCTCTTTACAAGTGCAACATGGCTGGAAAGCCAGCTGTTCTTACCC 1125
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 901 TGTTTCAAAAGGCTGCTCTTTACAAGTGCAACATGGCTGGAAAGCCAGCCGTTCTTACCC 960
Query 1126 GTGTTGTTGACAGTATGACTGACAACTTGCGACCAACTCGTGCTGAGGCCACGGATGTTG 1185
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 961 GTGTTGTTGACAGTATGACTGACAACTTGCGTCCAACTCGTGCTGAGGCAACGGATGTTG 1020
Query 1186 CTAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACCCTTCGTGGAT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACCCTTCGTGGAT 1080
Query 1246 TGTACCCTGTTGAGACAATATCAACTGTTGGTAGGATCTGTGCTGAGGCAGAAAAGGTTT 1305
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGTACCCTGTTGAGACAATTTCAACTGTTGGTAGGATCTGTGCTGAGGCAGAAAAGGTTT 1140
Query 1306 TCAATCAAGATTTGTACTTTAAGAAGACTGTCAAGTATGTTGGAGAACCAATGACTCACT 1365
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 TCAATCAAGATTTGTACTTTAAGAAGACTGTCAAGTATGTTGGAGAACCGATGACTCACT 1200
Query 1366 TGGAATCGATTGCTTCTTCAGCTGTACGGGCAGCCATTAAGGTTAAGGCATCCGTAATTA 1425
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1201 TGGAATCGATTGCTTCTTCAGCTGTACGGGCAGCCATCAAGGTTAAGGCATCCGTGATTA 1260
Query 1426 TATGCTTCACCTCTTCTGGAAGAGCAGCCAGATTGATTGCCAAATACAGGCCAACGATGC 1485
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1261 TATGCTTCACCTCTTCTGGAAGGGCAGCCAGGTTGATTGCCAAATACAGGCCAACGATGC 1320
Query 1486 CGGTTATTTCTGTTGTCATTCCCCGGGTTAAGACAAATCAACTGAAATGGAGCTTTAGTG 1545
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 CGGTTATTTCTGTTGTCATTCCCCGGGTTAAGACAAATCAGCTGAAATGGAGCTTTAGTG 1380
Query 1546 GAGCTTTTGAGGCGAGGCAGTCACTTATTGTCAGAGGCCTCTTCCCTATGCTTGCTGACC 1605
||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 1381 GAGCTTTTGAGGCGAGGCAGTCACTTATTGTAAGAGGTCTCTTCCCAATGCTCGCTGACC 1440
Query 1606 CTCGTCACCCTGCGGAATCTACAAGTGCGACAAACGAGTCAGTCCTGAAGGTTGCTCTAG 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CTCGTCACCCTGCGGAATCTACAAGTGCGACAAACGAGTCAGTCCTGAAGGTTGCTCTAG 1500
Query 1666 ACCATGGGAAGCATGCTGGAGTAATCAAGTCGCATGACAGAGTAGTGGTGTGTCAGAAAG 1725
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1501 ACCATGGGAAGCATGCTGGAGTTATCAAGTCGCATGACAGAGTAGTGGTGTGTCAGAAAG 1560
Query 1726 TTGGTGATGCATCTGTGGTTAAGATCATTGAGCTTGAGGATTAACTTTTGCCTCGCAAAA 1785
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1561 TTGGTGATGCATCTGTGGTTAAGATTATCGAGCTTGAGGATTAACTTTTGCCTCGCAAAA 1620
Query 1786 ACATT 1790
||||
Sbjct 1621 -CATT 1624
> Ahg934288 jgi|Araly1|934288|scaffold_402276.1
Length=1628
Score = 1953 bits (1057), Expect = 0.0
Identities = 1437/1620 (89%), Gaps = 28/1620 (2%)
Strand=Plus/Plus
Query 163 TCTCTCCACTTCCG-TCACCGAAG--ATGCATTCCAGTCATCTTCTTCTCGAGGAGCCGA 219
|||| ||| ||||| ||| |||| |||||||| |||||||| ||||||||||| ||||
Sbjct 1 TCTC-CCAATTCCGATCA--GAAGCTATGCATTCGAGTCATCTCCTTCTCGAGGAACCGA 57
Query 220 TCAGGATGGCTTCAATCCTCGAGCCTTCCAAATCTAGTTTCTTCCCGGCATTGACTAAGA 279
|||||||| |||| ||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct 58 TCAGGATGACTTCTATCCTTGAACCTTCCAAATCAAGTTTCTTCCCGGCTTTGACTAAGA 117
Query 280 TCGTCGGAACTCTAGGTCCTAAATCCCGATCCGTCGAGGCT-CTCTCCGGCTGTCTCAAA 338
| || || ||||||||||| ||||| ||||||||||||| | | || || |||||||||
Sbjct 118 TTGTTGGGACTCTAGGTCCGAAATCTCGATCCGTCGAGG-TGATTTCTGGTTGTCTCAAA 176
Query 339 GCCGGCATGTCTGTGGCTCGATTTGATTTCTCGTGGGGAGATGCTGATTATCACCAGGAG 398
|| || ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||||||
Sbjct 177 GCTGGAATGTCAGTGGCTCGATTCGATTTCTCTTGGTGTGATGCAGAGTATCACCAGGAG 236
Query 399 ACACTTGATAATTTGAAAG-TTGCTGTGAGGAGCACTAAGAAGCTTTGTGCTGTTATGCT 457
|| || || |||||| ||| | || |||| ||||||||||||||||||||||||||||||
Sbjct 237 ACGCTGGAGAATTTG-AAGATAGCCGTGAAGAGCACTAAGAAGCTTTGTGCTGTTATGCT 295
Query 458 TGATACTGTTGGACCTGAGCTACAAGTTATTAACAA-ATCTGAGAAAGCTATTACT-TTG 515
|| ||||| ||||||||| | |||||||||||||| | |||||||||||||| || ||
Sbjct 296 GGACACTGTGGGACCTGAGTTGCAAGTTATTAACAAGA-CTGAGAAAGCTATTTCTCTT- 353
Query 516 AAAGCTGATGGCCTTGTAACTTTGACACCGAATCAAGATCAAGAAGCTTCTTCTGAAGTT 575
|| || |||||||||||||||||||| |||| |||||| ||||||||||| ||||||| |
Sbjct 354 AAGGCCGATGGCCTTGTAACTTTGACTCCGAGTCAAGACCAAGAAGCTTCCTCTGAAG-T 412
Query 576 C-TTCCCATTAATTTCAATGGACTTGCCAAGGCAGTGAAGAAAGGAGACACCATCTTCGT 634
| ||||||||||||| |||| || ||||||||||| ||| |||||||||| ||||| ||
Sbjct 413 CTTTCCCATTAATTTTGATGGGCTAGCCAAGGCAGTTAAGCAAGGAGACACTATCTTTGT 472
Query 635 TGGGCAATACCTATTCACTGGTAGTGAAACAACTTCAGTTTGGCTCGAGGTTGATGAAGT 694
||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 473 TGGACAATACCTCTTCACTGGTAGTGAAACAACTTCAGTTTGGCTTGAGGTTGAAGAAGT 532
Query 695 TAAAGGAGATGATGTCATTTGCCTTTCAAGGAATGCTGCTACTCTGGCTGGTTCTTTGTT 754
||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 533 TAAAGGAGATGATGTCATTTGTATTTCAAGGAATGCTGCTACTCTGGCTGGTCCGTTGTT 592
Query 755 CACTTTACAC-TCCTCTCAAGTTCACATTGATCTCCCAACGCTTACAGAGAAGGATAAGG 813
||| || ||| | ||||||||||||||||||| | ||||| || || ||||||||||||
Sbjct 593 CACATTGCACGT-CTCTCAAGTTCACATTGATATGCCAACCCTCACTCAGAAGGATAAGG 651
Query 814 AGGTTATAAGCACATGGGGAGTTCAAAATAAAATCGATTTTCTCTCATTGTCTTATTGTC 873
|||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 652 AGGTTATAAGTACATGGGGAGTTCAGAATAAGATCGATTTTCTCTCATTATCTTATTGTC 711
Query 874 GTCATGCTGAGGATGTTCGCCAGACCCGTGAAATGCTTAAAAAG-TTGGGCGACCTCTCT 932
| ||||| || |||||||||||| ||||||| ||||| || || ||||| |||||||||
Sbjct 712 GACATGCAGAAGATGTTCGCCAGGCCCGTGAGTTGCTT-AACAGTTTGGGTGACCTCTCT 770
Query 933 CAAACACAAATATTTGCTAAGATTGAGAACGTAGAGGGACTAACCCACTTCGATGAGATT 992
||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| || |||
Sbjct 771 CAAACACAAATATTTGCGAAGATTGAGAATGAAGAGGGACTGACCCACTTCGACGAAATT 830
Query 993 CTACAAGAAGCTGATGGCATTATTCTTTCTCGTGGGAATTTGGGTATAGATTTACCCCCG 1052
||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 831 CTACAAGAAGCAGATGGCATTATTCTTTCTCGTGGGAATTTGGGTATTGATCTACCTCCG 890
Query 1053 GAAAAGGTGTTTTTGTTTCAAAAGGCTGCTCTTTACAAGTGCAACATGGCTGGAAAGCCA 1112
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 891 GAAAAGGTGTTTTTGTTCCAAAAGGCTGCTCTTTACAAGTGTAACATGGCTGGAAAGCCA 950
Query 1113 GCTGTTCTTACCCGTGTTGTTGACAGTATGACTGACAACT-TGCGACCAACTCGTGCTGA 1171
|| ||||| || |||||||| ||||||||||| ||||| | | || ||||||||||| ||
Sbjct 951 GCCGTTCTCACTCGTGTTGTAGACAGTATGACAGACAA-TCTCCGGCCAACTCGTGCAGA 1009
Query 1172 GGCCACGGATGTTGCTAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGA 1231
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GGCAACTGATGTTGCTAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGA 1069
Query 1232 GACCCTTCGTGGATTGTACCCTGTTGAGACAATATCAACTGTTGGTAGGATCTGT-GCTG 1290
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||
Sbjct 1070 GACTCTTCGTGGATTGTACCCTGTTGAGACCATATCAACTGTTGGTAGAATCTGTTG-TG 1128
Query 1291 AGGCAGA-AAAGGTTTTCAATCAAGATTTGTACTTTAAGAAGACTGTCAAGTATGTTGGA 1349
||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 1129 AGGCAGAGAAAG-TTTTCAACCAAGATTTGTTCTTCAAGAAGACTGTCAAGTATGTTGGA 1187
Query 1350 GAACCAATGACTCACTTGGAATCGATTGCTTCTTCAGCTGTACGGGCAGCCATTAAGGTT 1409
||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct 1188 GAACCAATGACTCACTTGGAATCTATTGCTTCTTCTGCTGTACGAGCAGCAATTAAGGTT 1247
Query 1410 AAGGCATCCGTAATTATATGCTTCACCTCTTCTGGAAGAGCAGCCAGATTGATTGCCAAA 1469
|| |||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||
Sbjct 1248 AAAGCATCCGTAATTATATGCTTCACCTCGTCTGGCAGAGCAGCGAGGTTGATTGCCAAA 1307
Query 1470 TACAGGCCAACGATGCCGGTTATTTCTGTTGTCATTCCCCGGGTTA-AGACAAATCAACT 1528
||| | ||||| ||||| ||| | |||||||||||||||||| ||| | |||||||| ||
Sbjct 1308 TACCGTCCAACTATGCCCGTTCTCTCTGTTGTCATTCCCCGGCTTACA-ACAAATCAGCT 1366
Query 1529 GAAATGGAGCTTTAGTGGAGCTTTTGAGGCGAGGCAGTCACTTATTGTCAGAGGCCTCTT 1588
||| ||||||||||| || || |||||||| ||||||||||||||||||||||| || ||
Sbjct 1367 GAAGTGGAGCTTTAGCGGGGCCTTTGAGGCAAGGCAGTCACTTATTGTCAGAGGTCTTTT 1426
Query 1589 CCCTATGCTTGCTGACCCTCGTCACCCTGCGGAATCTACAAGTGCGACAAACGAGTCAGT 1648
||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 1427 CCCCATGCTTGCTGACCCTCGTCACCCTGCGGAATCAACAAGTGCAACAAATGAGTCGGT 1486
Query 1649 CCTGAAGGTTGCTCTAGACCATGGGAAGCATGCTGGAGTAATCAAGTCGCATGACAGAGT 1708
||||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||
Sbjct 1487 TCTGAAAGTGGCTCTAGACCATGGGAAGCAAGCCGGAGTGATCAAGTCACATGACAGAGT 1546
Query 1709 AGTGGTGTGTCAGAAAGTTGGTGATGCATCTGTGGTTAAGATCATTGAGCTTGAGGATTA 1768
||||| ||||||||||| |||||||| || ||||| || ||||| ||||| ||||||||
Sbjct 1547 TGTGGTCTGTCAGAAAGTGGGTGATGCGTCCGTGGTCAAAATCATCGAGCTAGAGGATTA 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5