BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53000.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938194 jgi|Araly1|938194|scaffold_502385.1 1421 0.0
Ahg901512 jgi|Araly1|901512|Al_scaffold_0004_2162 604 4e-172
> Ahg938194 jgi|Araly1|938194|scaffold_502385.1
Length=953
Score = 1421 bits (769), Expect = 0.0
Identities = 850/890 (96%), Gaps = 2/890 (0%)
Strand=Plus/Plus
Query 194 GAGATAAAGAGAGAGGTATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTT 253
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAGAGATAGAGAGAGGTATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTT 63
Query 254 TGGCTATGGGACCTGGTCTCGGCGATATACCGGAAAGTTGTGTCGCTTGTGTGTTTATGT 313
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 64 TGGCTATGGGACCTGGTCTCGGCGATATACCGGAAAGCTGCGTCGCTTGTGTGTTTATGT 123
Query 314 ATCTGACTCCACCGGAGATTTGCAATCTGGCTGGATTGAATCGTTCTTTTCGTGGTGCGG 373
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 124 ATCTGACTCCGCCGGAGATTTGCAATCTGGCTGGATTGAATCGTTCATTTCGTGGTGCGG 183
Query 374 CTTCTTCGGATTCTGTTTGGGAAAAGAAGCTTCCGGAGAATTATCAGGATCTGCTTGATT 433
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 184 CTTCTTCGGATTCTGTTTGGGAGAAGAAGCTTCCGGCGAATTATCAGGATCTGCTTGATT 243
Query 434 TATTGCCGCCGGAGAGGTATCATAGTCTCTCGAAGAAAGATATCTTCGCTGTGCTTTCTC 493
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 244 TATTACCGCCGGAGAGGTATCATAGTCTCTCGAAGAAGGATATTTTCGCTGTGCTCTCTC 303
Query 494 GTCCAATTCCTTTTGATGATGATAATAAGGAAGTATGGATTGATAGAGTTACAGGACGAG 553
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 304 GTCCAATTCCCTTTGATGATGATAATAAGGAACTATGGATTGATAGAGTTACAGGACGAG 363
Query 554 TTTGTATGGCGATTTCTGCTAGAGGAATGTCTATTACTGGAATTGAAGACCGGAGATATT 613
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 364 TTTGTATGGCAATTTCTGCTAGAGGAATGGCTATTACTGGAATTGAAGACCGGAGATATT 423
Query 614 GGAACTGGATTCCAACGGAAGAATCTAGGTTCCATGTTGTAGCCTACTTACAGCAGATTT 673
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 424 GGAACTGGATTCCGACGGAAGAATCTAGGTTCCATGTTGTAGCTTACTTACAGCAGATTT 483
Query 674 GGTGGTTTGAAGTTGATGGAACAGTGAGATTCCATCTCCCACCTGGTGTATACTCTCTAT 733
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 484 GGTGGTTTGAAGTTGATGGAACAGTGAGATTCCATCTCCCACCTGGTATATACTCTCTAT 543
Query 734 CATTCAGAATCCATCTAGGGAGATTCACAAAAAGGCTAGGGAGACGTGTGTGCCACTTTG 793
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 544 CATTCAGAATCCATCTAGGGAGATTCACAAAAAGGCTAGGGAGACGCGTGTGCCACTTTG 603
Query 794 AACTCACTCATGGTTGGGATCTAAAGCCGGTAAGGTTTTCGCTTTCGACTTCTGATGGTC 853
||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 604 AACACACTCATGGTTGGGATTTAAAGCCGGTAAGGTTTTCGCTTTCGACCTCTGATGGTC 663
Query 854 AAGAAGCATCATGTGAATATTACTTGGACGACGTAGAGAGAAACGAAGCACTTG-GAAAA 912
|||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||
Sbjct 664 AAGATGCATCATGTGAATATTACTTGGACGATGTAGAGAGAGACGAAGCACTCAAGCAA- 722
Query 913 CACAAACGCGGTTACTGGATCGAGTATAGGGTTGGAGAATTCATAGTAAATGGATCAGAA 972
||||||||||||| |||||| |||||||||||||| ||||||||||| | ||||||||||
Sbjct 723 CACAAACGCGGTTGCTGGATAGAGTATAGGGTTGGTGAATTCATAGTGAGTGGATCAGAA 782
Query 973 CCATCGACAGAAATCCAATGGTCGATGAAACAGATTGACTGCACGCACTCGAAAGGAGGG 1032
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 783 CCATCGACCGAAATCCAATGGTCGATGAAACAGATTGACTGCACACACTCGAAAGGCGGG 842
Query 1033 TTATGTGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTgaaagaaca 1082
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTATGCGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTGAAAGAACA 892
> Ahg901512 jgi|Araly1|901512|Al_scaffold_0004_2162
Length=903
Score = 604 bits (327), Expect = 4e-172
Identities = 724/911 (79%), Gaps = 46/911 (5%)
Strand=Plus/Plus
Query 211 ATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTTTGGCTATGGGACCTG-G 269
||||| |||||||| ||||| || |||| | || || ||| | || | ||||| | |
Sbjct 1 ATGGGGTCGTCCTTCTCGAACCTCAACGGTGACACTAACGGTCTAGCAACCGGACC-GAG 59
Query 270 TCTCGGCGATATACCGGAAAGTTGTGTCGCTTGTGTGTTTATGT-ATCTGACTCCACCGG 328
|||||| ||||||||||| || || || |||| ||| || | | | |||||||| ||||
Sbjct 60 TCTCGGAGATATACCGGAGAGCTGCGTAGCTTCCGTGATTCT-TCACCTGACTCCGCCGG 118
Query 329 AGATTTGCAATCTGGCTGGATTGAATCGTTCTTTTCGTGGTGCGGCTTCTTCGGATTCTG 388
||||||||||||| ||| | |||||||| | ||||| || |||||||| || |||||||
Sbjct 119 AGATTTGCAATCTAGCTCGCTTGAATCGAGCATTTCGCGGCGCGGCTTCGTCAGATTCTG 178
Query 389 TTTGGGAAAAGAAGCTTCCGGA-G-AATTATC-AGGATCTGCTTGATTTATTGCCGCCGG 445
||||||| ||||||||||| | | ||||| | ||||| |||||||| |||| |||||||
Sbjct 179 TTTGGGAGAAGAAGCTTCC--ATGTAATTA-CAAGGATTTGCTTGATCTATTACCGCCGG 235
Query 446 AGAGGTATCATAGTCTCTCGAAGAAAGATATCTTCGC-TGTGCTTTCTCGTCCAATTCC- 503
|||||||||| |||||||| ||||| ||||| ||||| | |||| |||||||| | |||
Sbjct 236 AGAGGTATCAGAGTCTCTCTAAGAAGGATATATTCGCAT-TGCTCTCTCGTCCTA-TCCG 293
Query 504 TTTTGATGATGATAATAAGGAAGTATGGATTGATAGAGT-TACAGGACGAGTTTGTATGG 562
| | || |||| | ||||| |||| |||||||||||| | |||||||| ||||||||||
Sbjct 294 TCTCGACGATGGTCATAAGCAAGTGTGGATTGATAGA-TCGACAGGACGGGTTTGTATGG 352
Query 563 CGATTTCTGCTAGAGGAATGTCTATTACTGGAATTGAAGACCGGAGATATTGGAACTGGA 622
| ||||| || ||||||||| | || |||||||| ||||| || ||||||||||| ||||
Sbjct 353 CCATTTCGGCAAGAGGAATGGCGATAACTGGAATCGAAGATCGCAGATATTGGAATTGGA 412
Query 623 TTCCAACGGAAGAATCTAGGTTCCATGTTGTAGCCTACTTACAGCAGATTTGGTGGTTTG 682
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTGCAACAGAAGAATCAAGGTTCCATGTTGTAGCCTACTTACAGCAGATTTGGTGGTTTG 472
Query 683 AAGTTGATGGAAC-AGTGAGATTCCATCTCCCACCTGGTGTATACTCTCTATCATTCAGA 741
|||| ||||| | | |||| ||| |||| || |||||| |||||| |||||||||||||
Sbjct 473 AAGTAGATGGGATGA-TGAGTTTCAATCTTCCTCCTGGTATATACTGTCTATCATTCAGA 531
Query 742 ATCCATCTAGGGAGATTCACAAAAAGGCTAGGGA-GACGTGTGTGCCACTTTGAACTCAC 800
|| || || || |||||| | |||||| | |||| |||| || ||||| ||||||| |||
Sbjct 532 ATACACCTCGGAAGATTCTCGAAAAGGTT-GGGAAGACGAGTTTGCCATTTTGAACACAC 590
Query 801 TCATGGTTGGGA-TCTAAAGCCGGTAAGGTTTTCGCTTTCGACTTCTGATGGTCAAGAAG 859
|| |||||||| | ||||||| || ||||||| || || ||||| ||||| ||||| |
Sbjct 591 ACACGGTTGGGAGT-TAAAGCCTGTGCGGTTTTCACTCTCAACTTCAGATGGGCAAGAGG 649
Query 860 CATCATGTGAATATTACTTGGAC-GACGTAGAGAGAAACGAAGCACTTGGAA---AACAC 915
| ||||||||||| ||||||| | || | | || | || | | | || | ||||
Sbjct 650 CGTCATGTGAATACTACTTGG-CTGA-GAA-AG-GCGGTGAGGAAATGGGTAGGGAACAA 705
Query 916 AAACGCGG-------TTACTGGATCGAGTATAGGGTTGGAGAATTCATAGTAAATGGATC 968
||| | || || ||||| ||||||| |||||||||||| | || | | | ||
Sbjct 706 AAAGGAGGAGGAGAGTT-CTGGAGAGAGTATAAGGTTGGAGAATTTGTTGTGAGTTGCTC 764
Query 969 AGAACCATCGACAGAAATCCAATGGTCGATGAAACAGATTGACTGCACGCACTCGAAAGG 1028
||||||||| || ||| ||| |||||||||||||||||| || ||||| || ||||||||
Sbjct 765 AGAACCATCAACCGAAGTCCGATGGTCGATGAAACAGATCGATTGCACACATTCGAAAGG 824
Query 1029 AGGGTTATGTGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTgaaag-aacacaa-a 1086
||| ||||||| || ||||||||||| | |||||| | |||| |||| ||| ||| |
Sbjct 825 CGGGATATGTGTGGACTCAGTCTTCATCATCCCAATCG---ATGT-AAAGCAACGCAAGA 880
Query 1087 a--ggaaagct 1095
| ||||||||
Sbjct 881 AAAGGAAAGCT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5