BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53010.1
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485676 jgi|Araly1|485676|fgenesh2_kg.5__1668__AT3G53010.1 1334 0.0
> Ahg485676 jgi|Araly1|485676|fgenesh2_kg.5__1668__AT3G53010.1
Length=965
Score = 1334 bits (722), Expect = 0.0
Identities = 889/970 (92%), Gaps = 10/970 (1%)
Strand=Plus/Plus
Query 1 ATTATTCTGTCTTGCATCTTACTTCGACTCTGATTTGGATCTCAATCTCAATCTTCAAGT 60
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATTCTGTCTTGCTTCTCACTTCGACTCTGATTTGGATCTCAATCTCAATCTTCAAGC 60
Query 61 TTACTCATCAAAACAATGACAAAGATCTTCTACTACTTCTTCATCATCATTTTTCTTCAA 120
||| | || |||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 61 TTA--C-TCGAAACAATGACCAAGATCTTCTACTACTTCTTTATCATCAATTTTCTTCAA 117
Query 121 TCTCCACCGCATCTTCAATCCCAAACCA-TCACAAGGAACATCAGCATTTTCATCTTGGC 179
||| |||| || | ||||||||||||| || |||| ||||| |||||||||||||||||
Sbjct 118 TCTTCACCACAAATCCAATCCCAAACCATTC-CAAGAAACATTAGCATTTTCATCTTGGC 176
Query 180 CGGGCAAAGCAACATGGCGGGTCGAGGCGGTGTTTATAACGACACTGCCACAAACACCAC 239
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 177 GGGGCAAAGCAACATGGCGGGTCGAGGCGGAGTTTATAACGACACCGCCACAAACACCAC 236
Query 240 CGTGTGGGACGGTGTAATTCCGCCAGAATGCCGATCAAACCCTTCGATCCTCCGTCTCAC 299
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 237 CGTGTGGGACGGCGTAATTCCGCCGGAATGTCGATCAAACCCTTCGATCCTCCGTCTCAC 296
Query 300 GAG-TAAACTCGAGTGGAAAGAGGCTAAAGAGCCACTTCACGTTGACATTGACATTAATA 358
| | |||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 297 G-GCCAAACTCGAGTGGAAAGAGGCTAAAGAGCCACTACACGTTGACATTGATGTTAACA 355
Query 359 AGACTAATGGTGTTGGACCGGGGATGCCCTTTGCTAACCGGGTGGTTAACCGGTTTGGTC 418
| || |||||| ||||||| || ||| | ||||| ||||| ||| ||| |||||||||||
Sbjct 356 AAACCAATGGTATTGGACCAGGAATGTCATTTGCAAACCGAGTGATTACCCGGTTTGGTC 415
Query 419 AGGTGGGTTTGGTTCCGTGCTCTATCGGTGGGACTAAACTAAGCCAATGGCAAAAAGGTG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGGTGGGTTTGGTTCCGTGCTCTATCGGTGGGACTAAACTAAGCCAATGGCAAAAAGGTC 475
Query 479 AGTTTCTTTACGAGGAGACGGTGAAGAGGGCTAAAGCGGCGATGGCTAGTGGTGGTGGTG 538
|||||||||||||||| ||||| |||| | ||||||||| ||||||||||||||||
Sbjct 476 AGTTTCTTTACGAGGAAACGGTTCGGAGGTCCAAAGCGGCGGTGGCTAGTGGTGGTGG-- 533
Query 539 GCTCGTACCGGGCGGTTTTGTGGTATCAGGGTGAGTCTGATACGGTTGATATGGTCGATG 598
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 534 -CTCGTACCAGGCGGTTTTATGGTATCAGGGTGAGTCGGATACGGTTGATATGGTTGATG 592
Query 599 CTTCGGTATATAAGAAGAGACTAGTGAAGTTTTTCAGTGATCTTCGAAATGATTTACAAC 658
|||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 593 CTTCAGTTTATAAGAAGAGACTAGTCAAGTTTTTCAATGATCTTCGAAATGATTTACATG 652
Query 659 ACCCAAATCTTCCTATTATCCAGGTGGCTCTAGCGACAGGAGCAGGACCATATCTTGACG 718
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 653 AGCCAAATCTTCCTATTATCCAGGTGGCTCTAGCGACAGGTGCAGGACCATATCTTGACG 712
Query 719 CGGTGAGAAAAGCTCAACTGAAGACTGATCTTGAGAACGTGTATTGCGTTGACGCCAGAG 778
||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 713 CGGTGAGAAAAGCTCAATTGAAGACAGATCTTGAGAACGTGTATTGTGTTGATGCCAGAG 772
Query 779 GCCTACCTCTTGAACCGGACGGTTTGCATCTGACCACTTCCTCTCAGGTCCAGCTCGGTC 838
||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 773 GCCTACCACTTGAACCGGATGGTTTGCATCTGACCACTTCATCTCAGGTCCGGCTCGGTC 832
Query 839 ACATGATAGCCGAGAGTTTCTTGGCTATTCCAAATTCAGCTCGACCATCACTCTACATGC 898
|||||||||| |||||||||||||| ||||| |||||||||| |||||| ||||||||||
Sbjct 833 ACATGATAGCTGAGAGTTTCTTGGCCATTCCCAATTCAGCTCAACCATCGCTCTACATGC 892
Query 899 ATTTTTTCTCCTTGTTCTGTTCCctttatgtttctttaaatatttttggaactatctttc 958
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 893 ATTTTTCCTCCTTGTTCTGTTCCCTCTATGTTTCTTTAAATATTTTTGGAACTATCTTTC 952
Query 959 attttcttta 968
||||||||||
Sbjct 953 ATTTTCTTTA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40372169103
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5