BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53020.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485677 jgi|Araly1|485677|fgenesh2_kg.5__1669__AT3G53020.1 1103 0.0
> Ahg485677 jgi|Araly1|485677|fgenesh2_kg.5__1669__AT3G53020.1
Length=695
Score = 1103 bits (597), Expect = 0.0
Identities = 662/693 (96%), Gaps = 5/693 (1%)
Strand=Plus/Plus
Query 129 GAGCTTTGTCGTTTCAGTGGACAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 188
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAGCTTTGTCGTTTCAGTGGCCAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 63
Query 189 TCTGATTCTCAGGTTTTCTTGTTT-CTTAACTCAAAATGTAAGAGGTACTTCCATAACAA 247
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 64 TCTGATTCTCAGGTTTTCTTGTTTGCT-AACTCAAAGTGTAAGAGGTACTTCCATAACAA 122
Query 248 GTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGGATGC 307
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTTGAAGCCATCCAAGCTTACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGATGC 182
Query 308 AGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCAT 367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGCGCAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCAT 242
Query 368 TGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGA 427
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGTTGGTGCTACCTTGGAGGTGATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGA 302
Query 428 TGCAGCCAGGGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGA 487
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 TGCTGCCAGAGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATTAAAAAGACCAAAGATGA 362
Query 488 AAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTCAAGGCTAATTTCCC 547
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 363 AAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTGAAGGCTAATTTCCC 422
Query 548 CAAAGCTGCTGCTGCATCCAAGGGTCCTAAGGTGGGAGGTGGTGGTGGCAAACGCTGAAG 607
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 CAAAGCTGCTGCTGCATCCAAGGGTCCTAAGTTGGGAGGTGGTGGTGGCAAACGCTGAAG 482
Query 608 AGCTTAAAGCCATCTTTTCTCACTCTGCGTCTTT-TCTGCTAGTAGCTACTTTTAGTAGT 666
||||||| ||||| |||||||||| || |||||| ||||||||| |||||||||| ||||
Sbjct 483 AGCTTAA-GCCATATTTTCTCACTTTGTGTCTTTCTCTGCTAGTGGCTACTTTTACTAGT 541
Query 667 TGATGTTCATTTCTGAATATT-TGCAAAACATAAACCTTGTTATTTCGTTTTTGTCTCTC 725
| ||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 542 TAATGTTGATTTCTGAATATTCTGCAAAACGTAAACCTTGTTATTTCGCTTTTGTCTCTT 601
Query 726 ACTTTTGCTACTCTTATAATATCAGACTTGAGAATTTTGCTGCTTATGAACTTTATTTCA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 602 ACTTTTGCTACTCTTATAATATCAGACTTGAGAATTTTGCTGCTTATGAACTTCATTTCG 661
Query 786 CTGCTCTCTCTTGTCCTCCTATCATTAAAATCA 818
|||||||||||| ||||| ||| ||||||||||
Sbjct 662 CTGCTCTCTCTTTTCCTCTTATTATTAAAATCA 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5