BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53030.1
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485678 jgi|Araly1|485678|fgenesh2_kg.5__1670__AT3G53030.1 2793 0.0
Ahg897265 jgi|Araly1|897265|Al_scaffold_0005_1231 292 5e-78
Ahg489137 jgi|Araly1|489137|fgenesh2_kg.6__2271__AT5G22840.1 248 1e-64
> Ahg485678 jgi|Araly1|485678|fgenesh2_kg.5__1670__AT3G53030.1
Length=1871
Score = 2793 bits (1512), Expect = 0.0
Identities = 1762/1879 (94%), Gaps = 31/1879 (2%)
Strand=Plus/Plus
Query 1 TCTCTGCACAAGCTTCCAG--AAA--AAATCAAATC---A-A-A-AGAGAGAGAGATCCA 50
||||||||||||||||||| ||| |||||||||| | | | |||||||||||||||
Sbjct 1 TCTCTGCACAAGCTTCCAGAAAAATCAAATCAAATCAAAAGAGAGAGAGAGAGAGATCCA 60
Query 51 CA-AAATTGGATTGAATCGTCGCCGGATATTCCAAGAGTAGAGAGCTTAGTTTGTCTCGC 109
| ||||||| || ||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 61 -AGAAATTGGGTTCAATCGTCGCCGGATATTCCAAGAGTTGAGAGTTTAGTTTGTCTCCC 119
Query 110 GTTGCGTCTAGATTTACTGAATATGGAGGCGGAGAAGTGGAACAGCGACGGTGGTGAATA 169
|||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 120 GTTGCGTCTAGATTTAGTGAATATGGAGGTGGAGAAGTGGAACAGCGACGGCGGTGAATA 179
Query 170 CACGTCGGAGGACGAAGGTACAGAAGATTACCGACGCGGCGGTTACCACGCCGTTCGGAT 229
||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||
Sbjct 180 CACGTCGGAGGACGAAGGTACGGAGGATTACCGGCGCGGCGGTTACCACTCCGTTCGGAT 239
Query 230 CGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTT 289
||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 240 CGGTGACTCATTCAAAAACGGCCGGTATGTTGTTCAGAGCAAACTCGGTTGGGGTCATTT 299
Query 290 CTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTAGATATGTGGCTTTGAAGGTGCA 349
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 CTCTACTGTTTGGCTCGCGTGGGATACTCAATCCTCTAGATATGTGGCTTTAAAGGTGCA 359
Query 350 AAAGAGTGCTCAGCATTATACTGAAGCAGCCATGGATGAGATAACAATATTGCAACAGAT 409
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 360 AAAGAGTGCTCAGCATTATACTGAAGCTGCCATGGATGAGATAACTATATTGCAACAGAT 419
Query 410 TGCAGAGGGAGACACTGATGATACCAAATGTGTTGTGAAGCTTTTGGATCATTTCAAACA 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TGCAGAGGGAGACACTGATGATACCAAATGTGTTGTGAAGCTTTTGGATCATTTTAAACA 479
Query 470 CTCAGGTCCGAATGGTCAGCATGTATGTATGGTTTTTGAGTATTTGGGAGATAATCTGTT 529
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCAGGTCCGAATGGGCAGCATGTATGTATGGTTTTTGAGTATTTGGGAGATAATCTGTT 539
Query 530 AACGTTGATTAAGTATTCTGATTACCGTGGCTTACCTATTCCTATGGTTAAGGAGATTTG 589
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 AACGCTGATTAAGTATTCTGATTACCGTGGCTTGCCTATTCCGATGGTTAAGGAGATTTG 599
Query 590 TTATCATATGTTGGTTGGTTTAGACTACTTGCATAAACAGCTTTCGATTATACATACTGA 649
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TTATCATATGTTGGTTGGGTTAGACTACTTGCATAAACAGCTCTCGATTATACATACTGA 659
Query 650 TTTGAAGCCTGAGAATGTTTTGTTACCGTCAACTATTGATCCGTCTAAAGATCCGAGGAA 709
| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 660 TCTGAAGCCTGAGAATGTTTTGTTACCGTCAACGATTGATCCATCTAAAGATCCGAGGAA 719
Query 710 GTCTGGAGCTCCTCTTGTTCTCCCCACTGATAAGGATAATACAGTTGTTGACTCCAATGG 769
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GTCTGGAGCTCCTCTTGTTCTCCCCACTGATAAGGATAAGACAGTTGTTGACTCCAATGG 779
Query 770 TGATTTTGTCAAGAATCAAAAAACAGGAAGTCATAGAAAGGCAAAGCTTTCGGCTCAGGG 829
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||
Sbjct 780 GGATTTTGTCAAGAATCAAAAGACAGGTAGTCATAGAAAGGCAAATATTTCGGCTCATGG 839
Query 830 ACATGCAGAGAATAAGGGCAATACGGAATCTGATAAAGTTCGTGGAGTGGGATCACCGGT 889
| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 840 AAATGCAGAGAGTAAGGGCAATACTGAATCTGACAAAGTTCGTGGAGTGGGATCACCGGT 899
Query 890 TAATGGAAAA-CAATGTGCTGCAGAAAAATCGGTTGAAGAAGATTGTCCTTCTACTTCTG 948
|||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TAATGGAAAACCAA-GAGCTGCAGAAAAATCGGTTGAAGAAGATTGTCCTTCTACTTCTG 958
Query 949 ACGCAATTGAATTAGATGGTAGCGAGAAAGGAAAGCAGGGTGGTAAGAAAGGGAGTCGAT 1008
|| ||| || | ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 ACACAAATGGACTAGATGGCAGCGAGAAAGGAAAGCAAGGTGGTAAGAAAGGGAGTCGAT 1018
Query 1009 CAAGTCGAAGGCACCTTGTGGCATCTGCTGACCTCAAGTGTAAACTTGTTGACTTTGGTA 1068
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 CAAGTAGAAGGCACCTTGTGGCATCTGCTGACCTCAAGTGTAAACTGGTTGACTTTGGTA 1078
Query 1069 ATGCGTGTTGGACATACAAACAGTTCACAAGCGACATTCAAACGAGACAGTATAGGTGTC 1128
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 ACGCGTGTTGGACATACAAACAGTTCACAAGCGACATTCAAACGAGACAGTATAGGTGCC 1138
Query 1129 CAGAAGTAATCCTTGGATCTAAATACTCTACATCTGCAGATCTCTGGTCATTCGCGTGCA 1188
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1139 CAGAAGTAATCCTTGGATCTAAATACTCTACATCAGCAGATCTCTGGTCATTTGCGTGCA 1198
Query 1189 TATGTTTTGAACTTGTCACTGGAGATGTGCTATTTGATCCCCATAGTGGCGACAATTATG 1248
||||||||||||||| |||||||||||| || || |||||||||||||| ||||||||||
Sbjct 1199 TATGTTTTGAACTTGCCACTGGAGATGTACTGTTCGATCCCCATAGTGGAGACAATTATG 1258
Query 1249 ATAGAGATGAGGATCACTTGGCTCTGATGATGGAGCTTCTTGGGATGATGCCACGCAAGA 1308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATAGAGATGAGGACCACTTGGCTCTGATGATGGAGCTTCTTGGGATGATGCCACGCAAGA 1318
Query 1309 TAGCATTGGGTGGCCGCTACTCCAGAGATTTCTTTAACAGGCATGGTGATCTTCGACACA 1368
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGCATTGGGAGGCCGCTACTCCAGAGATTTCTTTAACAGGCATGGTGATCTTCGACACA 1378
Query 1369 TCAGAAGACTGCGTTTCTGGCCCATGAACAAAGTGCTGACCGAGAAGTACGAGTTCAGTG 1428
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 TCAGAAGACTGCGTTTCTGGCCCATGAACAAAGTCCTGACCGAGAAGTACGAGTTCAGTG 1438
Query 1429 AGCAAGATGCAAATGACCTGAGTGATTTTCTTGTTTCGATTCTTGATTTCGTCCCAGAGA 1488
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1439 AGCAAGATGCAAATGACTTGAGTGATTTTCTTGTTTCGATTCTTGATTTTGTCCCCGAGA 1498
Query 1489 AACGACCAACTGCAGCTCAGTGTCTGTTACATCCTTGGATCAACTCTGGTCCCCGCTCTA 1548
|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 1499 AACGACCAACTGCAGCTCAGTGTCTGTTACATCCCTGGATCAACTCTAGTTCCCGCTCTA 1558
Query 1549 TAAAACCTTCGCT-T-A---AA-GACGAAAATTC--A-GATAAGCTCGATACAGAG-AAG 1598
|||||||||| || | | || ||| ||||||| | || ||||| ||||||||| ||
Sbjct 1559 TAAAACCTTCACTCTCACCTAAAGACCAAAATTCCGAAGACAAGCTTGATACAGAGGAA- 1617
Query 1599 AACAAGAGGGAGAATGAGGAGCAAGAAGCTGTGGAAGTTAAAATGGGAAACGTTGTTATA 1658
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1618 AAGAAGAGGGAGAATGAGGAGCAAGAAGCTGTGGAAGTTAAAATGGGGAACGTTGTCATA 1677
Query 1659 TCATCCTTAGACTCTAAACCAGGTATGAGCCAAAGCTCCTCCACTCTTAAGCTAGCAATT 1718
||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 1678 TCATCCTCAGACTCTAAACCAGGTATGAGCCAAAGCTCC---ACTCTTAAGCAAGCGATT 1734
Query 1719 TGACTCCTGAGATATGTCTGTTCGATATCTGAGATCTGTGTACCACTCAAGCTGTTTAAT 1778
|||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1735 -GACTTCTGAGATTTGTCTGTTCGATATCTGAGCTCTGTGAACCACTCAAGCTGTTTAAT 1793
Query 1779 AGAAAGAACATTTTCATATACGCAGAGTGGTATCTTGTTTGTGTACTTCTACGAATCCAA 1838
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1794 AGAAAGAACAATTTCATATATGCAGAGTGGTATCTTGTTTGTGTACTTCTACGTATCCAA 1853
Query 1839 -TACCAATTATTCACATTT 1856
||||||| ||||||||||
Sbjct 1854 ATACCAAT-ATTCACATTT 1871
> Ahg897265 jgi|Araly1|897265|Al_scaffold_0005_1231
Length=1647
Score = 292 bits (158), Expect = 5e-78
Identities = 375/478 (78%), Gaps = 22/478 (5%)
Strand=Plus/Plus
Query 264 CAGAGCAAACTCGGTTGGGGCCATTTCTCTACTGTTTGGCTCT-CCTGGGATACTCAATC 322
||||| || || |||||||| |||||||||||||||||||| | | ||||| ||||||
Sbjct 142 CAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCT-TGCTTGGGACACTCAAGA 200
Query 323 CTCTAGATATGTGGCTTTGAAGGTGCAAAAGAGTGCTCAGCATTATACTGAAGCAGCCAT 382
|| | ||||| |||||||| || || ||||| ||||| || ||||| || ||||| ||
Sbjct 201 ATCGCGTTATGTAGCTTTGAAAGTTCAGAAGAGCGCTCAACACTATACAGAGGCAGCAAT 260
Query 383 GGATGAGATAACA-ATAT-TGCAACAGATTGCAGAGGGAGACACTGATGATACCAAATGT 440
||||||||||| | || | || |||||||||| || || ||| | | ||||| || |||
Sbjct 261 GGATGAGATAA-AGAT-TCTGAAACAGATTGCTGAAGGTGACCCGGGTGATAAGAAGTGT 318
Query 441 GTTGTGAAGCTTTTGGATCATTTCAAACACTCAGGTCCGAATGGTCAGCATGTATGTATG 500
||||| ||||| ||||||||||||| || || ||||| ||||| | ||||| ||||||
Sbjct 319 GTTGTAAAGCTACTGGATCATTTCAAGCATTCGGGTCCTAATGGGAAACATGTTTGTATG 378
Query 501 GTTTTTGAGTATTTGGGAGATAATCTGTTAAC-GTTGATTAAGTATTCTGATTACCGTGG 559
||||||||||||||||||||||| || || | ||| |||||||| ||||||||| ||
Sbjct 379 GTTTTTGAGTATTTGGGAGATAACCTTTTGTCAGTT-ATTAAGTACAGTGATTACCGAGG 437
Query 560 C-TTACCTATTC-CTATGGTTAAGGAGAT-T-TGTTATCATATGTTGGTTGGTTTAGACT 615
|| ||| ||| | |||||||| |||| | |||| |||||| |||||||| || || |
Sbjct 438 GGTT-CCTCTTCAC-ATGGTTAA--AGATCTCTGTTTTCATATTTTGGTTGGGTTGGATT 493
Query 616 A-CTTGCATAAACAGCTTTCGATTATACATACTGATTTGAAGCCTGAGAATGTTTTG-TT 673
| ||| ||| |||| || ||||| ||||||||||| ||||| ||||||||| || ||
Sbjct 494 ATCTT-CATCGTGAGCTCTCTATTATTCATACTGATTTAAAGCCGGAGAATGTTCTGCTT 552
Query 674 ACCGTCAACTATTGATCCGTCTAA-AGATCCGAGGAAGTCTGGAGCTCCTCTTGTTCT 730
||| || |||||||| || || |||| | ||| ||| || | ||| ||||||||
Sbjct 553 TT-GTCTACGATTGATCCATC-AAGAGATGCTCGGAGGTCGGGTGTTCCACTTGTTCT 608
> Ahg489137 jgi|Araly1|489137|fgenesh2_kg.6__2271__AT5G22840.1
Length=1678
Score = 248 bits (134), Expect = 1e-64
Identities = 376/491 (77%), Gaps = 23/491 (5%)
Strand=Plus/Plus
Query 1062 TTTGGTAATGCGTGTTGGACATACAAACAGTTCACAAGCGACATTCAAACGAGACAGTAT 1121
||||| ||||| |||||||| || |||||||| || || || ||||| || ||||||||
Sbjct 968 TTTGGGAATGCTTGTTGGACTTATAAACAGTTTACGAGTGATATTCAGACAAGACAGTAC 1027
Query 1122 AGGTGTCCAGAAGTAATCCTTGGATCTAAATACTCTACATCTGCAGATCTCTGGTCATTC 1181
||||||| || || | ||||| || |||||||| || || || ||| | ||||||||
Sbjct 1028 CGGTGTCCTGAGGTTGTTCTTGGCTCAAAATACTCAACCTCAGCGGATATGTGGTCATTT 1087
Query 1182 GCGTGCATATGTTTTGAACTTGTCACTGGAGATGTGCTATTTGATCCCCATAGTGGCGAC 1241
|| ||||| |||||||| |||| ||| |||||||| ||||||||||| || ||||| ||
Sbjct 1088 GCTTGCATTTGTTTTGAGCTTGCCACCGGAGATGTTCTATTTGATCCTCACAGTGGTGAA 1147
Query 1242 AA-TTATGATAGAGATGAGGATCACTTGGC-TCTGATGATGGAGCTTCTTGGGATGATGC 1299
|| || ||| | ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1148 AACTT-TGAGCGGGATGAGGATCACTTGGCAT-TGATGATGGAGCTTCTTGGGATGATGC 1205
Query 1300 CACGCAAGATAGCATTGGGTGGCCGCTACTC-CAGAGATTTCTTTAACAGGCATGGTGAT 1358
|||| ||||| ||||| ||||| ||| | || | | |||||||| ||| | || |||||
Sbjct 1206 CACGAAAGATTGCATTAGGTGGACGCCATTCGCGG-GATTTCTTCAACCGACAGGGTGAA 1264
Query 1359 CTTCGACACATCAGAAGACTGCG-TTTCTGGCC-CATGAACAAAGTGCTGACC-GAGAAG 1415
|| | |||||||| | | || ||| ||||| | | | ||| || || | | || ||
Sbjct 1265 CTGAGGCACATCAGGCGGTTACGGTTT-TGGCCACTT-AGCAAGGT-CTTAACAGATAAA 1321
Query 1416 TACGAGTTCAGTGAGCAAGATGCAAATGACCT-G-AGTGATTTTCTTGTTTCG-ATTCTT 1472
|| || ||||| ||| |||| |||| || | | | | ||||| | | ||| ||||||
Sbjct 1322 TATGACTTCAGCGAGGAAGACGCAATTG-CTTTGCAA-GATTT-CATCATTCCCATTCTT 1378
Query 1473 GA-TTTCGTCCCAGAGAA-ACGACCAACTGCAGCTCAGTGTCTGTTACATCCTTGGATCA 1530
|| ||| || || ||||| | |||| || || |||||||| || || || ||||| |
Sbjct 1379 GAATTT-GTACCTGAGAAGA-GACCGACGGCTGCTCAGTGCCTAACGCACCCATGGATGA 1436
Query 1531 ACTCTGGTCCC 1541
| || ||||||
Sbjct 1437 A-TCCGGTCCC 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70009870310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5