BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53040.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485679 jgi|Araly1|485679|fgenesh2_kg.5__1671__AT3G53040.1 1995 0.0
> Ahg485679 jgi|Araly1|485679|fgenesh2_kg.5__1671__AT3G53040.1
Length=1564
Score = 1995 bits (1080), Expect = 0.0
Identities = 1427/1588 (90%), Gaps = 50/1588 (3%)
Strand=Plus/Plus
Query 53 CTTGGAAGCCAAGCAAACAAGAAACAAATCATGGCATCAGGACAACGGGAGGCAGAGAGG 112
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 CTTGGATTCCAAGCAAACAAGAAACAAATCATGGCATCAGGACAACGGGAGGCAGAGAGG 80
Query 113 TCCGCCAAGGCCGAGAGAGCTGAGGCTGCAGCGAGTCTAGCGGCTGAAGATTTGAAAGAT 172
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 81 TCCGCGAAGGCCGAGAGAGCTGAGGCTGTGGCGAGTCTAGCGGCTGAAGATTTGAAAGAT 140
Query 173 ATCAACAAAGGTGATGTGACGTACAAATTAACGGAGAGGACAACGACGACCGAGCCTGAG 232
|||||||||||||| ||||||||||| | |||||||||||||| || |||||||| |||
Sbjct 141 ATCAACAAAGGTGACGTGACGTACAAGGTGACGGAGAGGACAACAACTACCGAGCCAGAG 200
Query 233 AGGCCTGGCCTGATAGGCTCGGTGATGAAGGCGGTGCAAGGAACTAAAGACGCAGTCATC 292
|| || || ||||| || || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 201 AGACCCGGGCTGATTGGTTCAGTGATGAAGGCGGTGCAAGGAACTAAAGAAGCAGTGATA 260
Query 293 GGTAAAAGTCATGATACGGCTGAGTCAACGAGGGAGGGAGCCGATATTGCATCGGAGAAG 352
|||||||| |||||| |||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 261 GGTAAAAGCCATGATGCGGCTGAGTCAACGAGAGAGGGAGCCGAAATTGCATCAGAGAAG 320
Query 353 GCAGCGGGGATGAGAGACACCACCGGAGAGGTTAGAGACAGTACTGCGCAGAAGACTAAG 412
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 GCAGCGGGGATGAGAGACGCCACAGGAGAGGTTAGAGACAGTACTGCGCAGAAGACTAAG 380
Query 413 GAAACTGCAGATTACACGGCCGATAAGGCAAGAGAAGCTAAAGATAAGACTGCGGACAAG 472
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 381 GAAACTGCAGATTACACGGCCGATAAGGCGAGAGAAGCTAAAGATAAAACTGCGGAAAAG 440
Query 473 ACTAAGGAAACCGCAGATTACGCGGCAGAGAAGGCAAGAGAAGCTAAAGATAGAACGGCA 532
|| |||||||||||||| ||| ||| |||||||||||||||||| |||||| ||||||
Sbjct 441 ACGAAGGAAACCGCAGAATACATGGCGGAGAAGGCAAGAGAAGCTCAAGATAAAACGGCG 500
Query 533 GACAAGACTAAGGAAACGGCAGAATACACGGCGGAGAAGGCAAGAGAAGCTAAAGATAAA 592
|| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 501 GATAAGACAAAGGAAACCGCAGGTTACACGGCGGAGAAGGCAAGAGAAGCTAAAGATAAA 560
Query 593 ACGGCGGATAAGTTG-GGTGAATA-TAAAGATTACACGGCAGAGAAGGCAAAGGAAGCCA 650
|||||||||||| | | ||| | ||| ||||||||||||||||||||||||||||
Sbjct 561 ACGGCGGATAAGACGAAG-GAA-ACCGCAGAATACACGGCAGAGAAGGCAAAGGAAGCCA 618
Query 651 AAGACACGACGGCGGAGAAGCTGGGTGAGTACAAAGACTACACGGTGGATAAGGCGAAAG 710
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 619 AAGACACGACGGCCGAGAAGCTGGGTGAGTACAAAGACTACACGGTGGATAAGGCAAAAG 678
Query 711 AAGCTAAGGATAAGACGGCAGAGAAAGCAAAGGAAACCGCGGAATACACCT-CGGATAAG 769
|||||||||||||| |||||||||||||||||||||| |||||||| | || ||||||||
Sbjct 679 AAGCTAAGGATAAGGCGGCAGAGAAAGCAAAGGAAACTGCGGAATATA-CTGCGGATAAG 737
Query 770 GCGAGGGAAACAAAAGATAAGACAGCTGAGAAAG-TGGGCGAATATAAAGACTACACGGC 828
|| |||||| ||||||| | ||| || ||| ||| |||| || || |||||||||||||
Sbjct 738 GCAAGGGAAGCAAAAGACACGACGGCGGAG-AAGCTGGGTGAGTACAAAGACTACACGGT 796
Query 829 GGAGAAAGCAAAGGAAACTGCGGATAAGGCGAGGGAAGCAAAAGATAAGACAGCTGAGAA 888
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 797 GGAGAAAGCAAATGAAACTGCGGAGAAGGCGAGGGAAGCGAAAGATAAGACAGCTGAGAA 856
Query 889 AGTGGGAGAATATAGAGACTACACGGCAGAGAAGGCGACAGAAACGAAAGATGCAGGTGT 948
|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 857 AGTGGGCGAATATAAAGACTACACGGCAGAGAAGGCGACAGAAGGGAAAGATGCAGGAGT 916
Query 949 GAGTAAGATCGGAGAACTGAAGGATAGTGCAGTGGACACTGCTAAAAGAGCTATGGGTTT 1008
||||| | | || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 917 GAGTAGGCTTGGTGAACTGAAGGATAGTGCAGTGGACACAGCTAAAAGAGCTATGGGTTT 976
Query 1009 CTTGTCGGGCAAGACAGAGGAAACCAAACAAAAAGCCGTTGAGACCAAAGACACGGCCAA 1068
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CTTGTCGGGCAAGACAGAAGAAACCAAACAAAAAGCCGTTGAGACCAAAGACACGGCCAA 1036
Query 1069 GGAAAAGATGGACGAGGCGGGAGAAGAAGCAAGGCGGAAGATGGAAGAGATGAGACTTGA 1128
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1037 GGAGAAGATGGACGAGGCGGGAGAAGAAGCGAGGCGGAAGATGGAAGAGATGAGACTTGA 1096
Query 1129 GGGCAAAAAACTTGACGAGGATGCTTCTAGAAAGACACAACAGAGTACCGAATCTGCTGC 1188
||||||| ||||||| ||||||||||||| |||||| |||||||| |||||||| |||||
Sbjct 1097 GGGCAAAGAACTTGAAGAGGATGCTTCTAAAAAGACGCAACAGAGCACCGAATCAGCTGC 1156
Query 1189 TGACAAAGCTCACGAGACTAAAGATTCCGTAGCCCAAAGAGGTGAAGAAGGGAAGGGAAG 1248
||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TGACAGAGCCCAAGAGACTAAGGATTCCGTAGCCCAAAGAGGTGAAGAAGGGAAGGGAAG 1216
Query 1249 TATAATGGGTGCGTTGGGGAACATGACTGGAGCTATAAAGAGCAAGCTGACTGGTGCTAC 1308
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1217 TATAATGGGTGCGTTGGGGAACATGACCGGAGCTATAAAGAGCAAGCTGACTGGTACTAC 1276
Query 1309 GACGCCCTCTGATGAGGAGACGCGCGC-GTCGGCCCA-TGGAGACGAGAGCACAGGGAAG 1366
|||||| ||||| |||||||| |||| | ||||| | ||||| ||||||||| ||||||
Sbjct 1277 GACGCCGTCTGACGAGGAGACAAGCGCCG-CGGCC-AGTGGAGGCGAGAGCACGGGGAAG 1334
Query 1367 ACAGTTGTGGCGGTTGACGTGAAAGATACTAGGCCTGGATACGTGGCGACGGTACTGAAA 1426
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1335 ACAATTGTGGCGGTTGACGTGAAAGATACTAGGCCTGGATACATCGCGACGGTACTGAAA 1394
Query 1427 GAGGCGGATCAGATGACCGGTCAAACTTTCAATGACGTTGGAGAGATCGATGACGAGGAG 1486
| |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1395 GCGGCGGATCAGATGACCGGTCAAACTTTCAACGACGTTGGAGAGATCGATGA--AG-AG 1451
Query 1487 AAAGTGAGAATCGTCGTGGGAGAGAAAAAGCTGTAGTAAAATTAGAACTATACGTTTTGT 1546
|| | | | ||| | | ||| | || ||| | | || ||||||||
Sbjct 1452 AA-G-------C-T-GTG--ATA-AAA----T-TA-TAAC-T-A----TA--CGTTTTGT 1484
Query 1547 GGTTTTCTGTAAAACGATGATAACAAGTTTTTCGTTTCTCTCTGTTATGTTATGTCTTTG 1606
||||||||||||||||| |||||| ||||||| ||| |||||||||||| ||||
Sbjct 1485 GGTTTTCTGTAAAACGACGATAACTAGTTTTTA-TTT-TCTCTGTTATGT-----CTTT- 1536
Query 1607 TTCAATCTTGACTTGTAATAAAACTACT 1634
||| ||||||||||||||||||||||||
Sbjct 1537 TTCGATCTTGACTTGTAATAAAACTACT 1564
Score = 289 bits (156), Expect = 5e-77
Identities = 368/466 (79%), Gaps = 31/466 (7%)
Strand=Plus/Plus
Query 395 ACTGCGCAGAAGACTAAGGAAACTGCAGATTACACGGCCGATAAGGCAAGAGAAGCTAAA 454
|||||| | ||||| |||||||| ||||| |||| ||| || ||||||||||||||| ||
Sbjct 429 ACTGCGGAAAAGACGAAGGAAACCGCAGAATACATGGCGGAGAAGGCAAGAGAAGCTCAA 488
Query 455 GATAAGACTGCGGACAAGACTAAGGAAACCGCAGATTACGCGGCAGAGAAGGCAAGAGAA 514
||||| || ||||| ||||| ||||||||||||| |||| |||| |||||||||||||||
Sbjct 489 GATAAAACGGCGGATAAGACAAAGGAAACCGCAGGTTACACGGCGGAGAAGGCAAGAGAA 548
Query 515 GCTAAAGATAGAACGGCAGACAAGACTAAGGAAACGGCAGAATACACGGCGGAGAAGGC- 573
|||||||||| |||||| || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 549 GCTAAAGATAAAACGGCGGATAAGACGAAGGAAACCGCAGAATACACGGCAGAGAAGGCA 608
Query 574 AAGAGAAGCTAAAGATAAAACGGCGGATAAGTTGGGTGAATATAAAGATTACACGGCAGA 633
||| ||||| ||||| | ||||| || ||| ||||||| || ||||| ||||||| ||
Sbjct 609 AAG-GAAGCCAAAGACACGACGGCCGAGAAGCTGGGTGAGTACAAAGACTACACGGTGGA 667
Query 634 GAAGGCAAAGGAAGCCAAAGACACGACGGCGGAG-AAGC-TGGGTGAGTACAAAGACTAC 691
|||||||| ||||| || || | | |||| ||| |||| || | | | || ||
Sbjct 668 TAAGGCAAAAGAAGCTAAGGATAAGGCGGCAGAGAAAGCAAAGGAAACTGC--GGAATAT 725
Query 692 ACGGTGGATAAGGCGAA-AGAAGCTAAGGATAAGACGGCAGAGAA--------AG--CAA 740
|| | ||||||||| || ||||| || || | |||||| ||||| || |||
Sbjct 726 ACTGCGGATAAGGC-AAGGGAAGCAAAAGACACGACGGCGGAGAAGCTGGGTGAGTACAA 784
Query 741 AGGA--A-ACCGCGGA-ATA-C------ACCT-CGGATAAGGCGAGGGAAACAAAAGATA 788
| || | || | ||| | | | | || |||| |||||||||||| | |||||||
Sbjct 785 A-GACTACACGGTGGAGAAAGCAAATGAAACTGCGGAGAAGGCGAGGGAAGCGAAAGATA 843
Query 789 AGACAGCTGAGAAAGTGGGCGAATATAAAGACTACACGGCGGAGAA 834
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 844 AGACAGCTGAGAAAGTGGGCGAATATAAAGACTACACGGCAGAGAA 889
Score = 244 bits (132), Expect = 1e-63
Identities = 258/317 (81%), Gaps = 16/317 (5%)
Strand=Plus/Plus
Query 404 AAGACTAAGGAAACTGCAGATTACACGGCCGATAAGGCAAGAGAAGCTAAAGATAAGACT 463
||||| |||||||| |||| ||||||||| || ||||||||||||||||||||||| ||
Sbjct 504 AAGACAAAGGAAACCGCAGGTTACACGGCGGAGAAGGCAAGAGAAGCTAAAGATAAAACG 563
Query 464 GCGGACAAGACTAAGGAAACCGCAGATTACGCGGCAGAGAAGGC-AAGAGAAGCTAAAGA 522
||||| ||||| |||||||||||||| ||| ||||||||||||| ||| ||||| |||||
Sbjct 564 GCGGATAAGACGAAGGAAACCGCAGAATACACGGCAGAGAAGGCAAAG-GAAGCCAAAGA 622
Query 523 TA-GAACGGCAGACAAGACTAAG-GA-AACGGCAGAATACACGGCGGAGAAGGCAAGAGA 579
| | ||||| || ||| || | || || ||| ||||||| ||| ||||||| |||
Sbjct 623 CACG-ACGGCCGAGAAG-CTGGGTGAGTAC-AAAGACTACACGGTGGATAAGGCAAAAGA 679
Query 580 AGCTAAAGATAAAACGGC-G-GATAAGTTGGGTGAATA-TAAAGATTACACGGCAGAGAA 636
|||||| ||||| |||| | || ||| | ||| | | || || || || || ||
Sbjct 680 AGCTAAGGATAAGGCGGCAGAGA-AAGCAAAG-GAA-ACTGCGGAATATACTGCGGATAA 736
Query 637 GGCAAAGGAAGCCAAAGACACGACGGCGGAGAAGCTGGGTGAGTACAAAGACTACACGGT 696
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GGCAAGGGAAGCAAAAGACACGACGGCGGAGAAGCTGGGTGAGTACAAAGACTACACGGT 796
Query 697 GGATAAGGCGAAA-GAA 712
||| || || ||| |||
Sbjct 797 GGAGAAAGC-AAATGAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5