BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53050.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323850 jgi|Araly1|323850|fgenesh1_pm.C_scaffold_5001394           433    9e-121


> Ahg323850 jgi|Araly1|323850|fgenesh1_pm.C_scaffold_5001394
Length=438

 Score =  433 bits (234),  Expect = 9e-121
 Identities = 298/327 (91%), Gaps = 11/327 (3%)
 Strand=Plus/Plus

Query  1    ATGGGAGA--CTC-ACATTGCCGTTGTCTTCATGGCTTTATTTTGCTTGTTGTTCTGTTT  57
            ||||||||  | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGGGAGATTCACAACATTGCCGTTGTCTTCATGGCTTTATTTTGCTTGTTGTTATGTTT  60

Query  58   CTT-TCCTTC-GTGTTTAGTTTCGCTTCAAAGATAGACGTTTCTTTTCACGGAGACGAGA  115
            ||| | | || ||||||||||| ||||||||||| |||||||||| |||||| ||| |||
Sbjct  61   CTTAT-C-TCTGTGTTTAGTTTAGCTTCAAAGATGGACGTTTCTTCTCACGGTGACCAGA  118

Query  116  AACGTAGTCTCTCTAGCTCCATTAATTCCTCTCTTAGTGAGTCAGCGGAATACACAATGT  175
            ||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||
Sbjct  119  AACGTAGTCTCTCTAGCTCCATTAATTCCTCTCTTAGCGAGTCCGTGGAATATACAATGT  178

Query  176  GCGCGACTCATAAAGAGGCTAAGGATGG--TAAACCAATCGCATTGGATTTCGATTGCGA  233
            |||||| |||||  ||||||||||||||  ||||||||||||||||||||| ||||| ||
Sbjct  179  GCGCGAATCATAGGGAGGCTAAGGATGGTATAAACCAATCGCATTGGATTTTGATTGTGA  238

Query  234  ACA-AGGATATGTTATTTCAAAGATCACTTACGCCGACTATGGCCAATCCACTGGTAGTT  292
            | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  239  A-AGAGGATATGTTATTTCTAAGATCACTTACGCCGACTATGGCCAATCCACTGGTAGTT  297

Query  293  GTGGGAAATTTAAACGCGGTAATTGCG  319
            |||||||||||||||||||||| ||||
Sbjct  298  GTGGGAAATTTAAACGCGGTAACTGCG  324


 Score =  200 bits (108),  Expect = 1e-50
 Identities = 113/115 (98%), Gaps = 2/115 (2%)
 Strand=Plus/Plus

Query  351  GAAATGTCTTAGGAAAGAGAAGTGTAAGTTGTTTGTTCCAGACAAGATTTTTGGTCCGAG  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  GAAATGTCTTAGGAAAGAGAAGTGTAAGTTGTTTGTTCCAGACAAGATTTTTGGTCCGAG  383

Query  411  CCACTGCAAGGGAGCT-TAAGTCTCGTTATTGACGCTACTTGTAGAAAA-CTTAG  463
            |||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  384  CCACTGCAAGGGAGCTCTAAGTCTCGTTATTGACGCTACTTGTAGAAAAACTTAG  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5