BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53065.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485680 jgi|Araly1|485680|fgenesh2_kg.5__1672__AT3G53065.1         645    0.0  


> Ahg485680 jgi|Araly1|485680|fgenesh2_kg.5__1672__AT3G53065.1
Length=489

 Score =  645 bits (349),  Expect = 0.0
 Identities = 424/458 (93%), Gaps = 14/458 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAACTTCACA-T-TATT-TTCGTCGTCATTGCTTCATCATTTTGCTTCTTGTTATG  57
            ||| |||||||||| | | || ||||| ||||| |||| |||||||||||||||||||||
Sbjct  1    ATGAAAACTTCACATTGTTTTCTTCGTTGTCATGGCTTAATCATTTTGCTTCTTGTTATG  60

Query  58   TTTCTTTCATCGGTTTCTAATCTTGCTTCAAAAATCAACAACAGTTCTTTTGATGCAAGA  117
            ||||||||||||||||||||||||||  |||||||   |||| |||||||||||||||||
Sbjct  61   TTTCTTTCATCGGTTTCTAATCTTGCAACAAAAAT---CAACGGTTCTTTTGATGCAAGA  117

Query  118  GGCACTAAAATCAATAGTGATCCGAAACATATCTCCAATTC-AAA-GTCCGGAGGATCTC  175
            |||||||||||| | |||||||||||||||||||||||||| ||| ||  ||||||||||
Sbjct  118  GGCACTAAAATCGACAGTGATCCGAAACATATCTCCAATTCAAAAGGT--GGAGGATCTC  175

Query  176  CTCAAC-GGGACAAAGAATATCCTCTGTGCGGGTCGAATAACCCGTCAGAGGATGGTATC  234
            ||| || ||| ||||||||||||||| |||||||  ||||||||||| ||||||||||||
Sbjct  176  CTCCACAGGG-CAAAGAATATCCTCTATGCGGGTTAAATAACCCGTCTGAGGATGGTATC  234

Query  235  ATATATGCACCTTTTTGCGACAAAGGATATGTTTTTTCTCGA-ATCAAATTCGCTGACTA  293
            |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct  235  ATATATGCACCTTTTTGCGATAAAGGATATGTTTTTTCTC-AGATCAAATTCGCTGACTA  293

Query  294  TGGTCAGCCCGGTGGTTCATCATGTGAAACGCTTAAACGTGGAAACTGCGGTGCGCCGGC  353
            |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  294  TGGTCAGCCCAGTGGTTCATCATGTGAAACGCTTAAACGTGGAAACTGCGGCGCGCCCGC  353

Query  354  TACTTTGAGACTCGTCAAAGAGAATTGTCTTGGAAAAGAACGGTGTAGGATTTATATTAC  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  TACTTTGAGACTCGTCAAAGAGAATTGTCTTGGAAAAGAACGGTGTAGGATTTATATTAC  413

Query  414  AGACGAGATGTTTGGGCCGACGCATTGTAAAGGACCTG  451
            ||||||||||||||| ||||||||||||||||||||||
Sbjct  414  AGACGAGATGTTTGGACCGACGCATTGTAAAGGACCTG  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5