BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53070.1

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg348401 jgi|Araly1|348401|fgenesh1_pg.C_scaffold_5001793           324    3e-88


> Ahg348401 jgi|Araly1|348401|fgenesh1_pg.C_scaffold_5001793
Length=501

 Score =  324 bits (175),  Expect = 3e-88
 Identities = 198/209 (95%), Gaps = 1/209 (0%)
 Strand=Plus/Plus

Query  87   GGACTTCTCTT-CTAAGTTGGGCAATCAGATTCCAGTTTGTCGTCATCAAAACAGGTCTA  145
            ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  173  GGAGTTCTCTTCCTAAGTTGGGCAATCAGATTCCAGTTTGTCGTCACCAAAACAGGTCTA  232

Query  146  GGGCCCCTGTATTGATGTTTGATTGCAAAGAGAAAGGATATGTTTTCTCAAAGATCAATT  205
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  233  GGGCCCCTGTATTGATGTTTGATTGCAAAGAGAAAGGATATGTTTTCACAAAGATCAATT  292

Query  206  TCGCCGACTATGGCCATTCAAGTGGTGATTGTGGTAACTTTAGACGCGGCACTTGTGGTG  265
            ||||||||||||||||| |||||||||||||||||||||||||||| || | ||| || |
Sbjct  293  TCGCCGACTATGGCCATGCAAGTGGTGATTGTGGTAACTTTAGACGTGGTAATTGCGGCG  352

Query  266  CACCCGATACCTTGAGGCTTGTCAAAAAG  294
            ||||||||||||||||||| |||||||||
Sbjct  353  CACCCGATACCTTGAGGCTCGTCAAAAAG  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11217743166


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5