BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53080.1 Length=651 Score E Sequences producing significant alignments: (Bits) Value Ahg898237 jgi|Araly1|898237|Al_scaffold_0005_2203 699 0.0 Ahg348399 jgi|Araly1|348399|fgenesh1_pg.C_scaffold_5001791 106 2e-22 > Ahg898237 jgi|Araly1|898237|Al_scaffold_0005_2203 Length=468 Score = 699 bits (378), Expect = 0.0 Identities = 439/469 (94%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 21 ATGGAAACTTTACAATGTCGTCATCAGCATGTCTTCATTTTGCTTCTTGTCCTATTTCAT 80 ||||| |||||||| ||||||||| | |||| |||||||||| ||||| | ||||||||| Sbjct 1 ATGGATACTTTACATTGTCGTCATAATCATGGCTTCATTTTGATTCTTCTTCTATTTCAT 60 Query 81 TCCTCTCTGTTTGGTTTAGCTTCAAAGATCGATGTTTCTGACGATGCACGAGGCATCAGA 140 || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 TCATCTCTGTTTAGTTTAGCTTCAAAGATCGATGTTTCTGATGATGCACGAGGCATCAGA 120 Query 141 ATCGACGGTGGCCAGAAACGTTTTCTAACTAATTCTCCTCAACATGGCAAGGAACATGCA 200 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 121 ATCGACGGTGACCAGAAACGTTTTCTCACTAATTCTCCTCAACATGGCAAGGAACATGTA 180 Query 201 GCGTGTACGAACGAAGAACCTGATCTCGGTCCGCTGACGCGTATTTCTTGCAATGAACCT 260 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||| Sbjct 181 GCGTGTACGAATGAAGAACCTGATCTCGGTCCTCTGACGCTTATTTCTTGCAACGAACCT 240 Query 261 GGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCACTGGTACATGTGGA 320 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 GGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCAGTGGTACATGTGGA 300 Query 321 CACTTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGT 380 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CACTTTAGACACGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGT 360 Query 381 CTTGGAAAAGA-GAAGTGTCACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCAAGTG 439 ||| |||||| || |||| ||||||||||||||||||||||||||||||||||| | || Sbjct 361 CTTAAAAAAGAAGA-GTGTTACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCCACTG 419 Query 440 CAAAGGAGCTCCTATGCTCGCTGTTGAAACCACTTGTACAATAGCTTAG 488 |||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 420 CAAAGGAGCTCCTAGGCTCGCTGTTGAAACCACTTGTACACTAGCTTAG 468 > Ahg348399 jgi|Araly1|348399|fgenesh1_pg.C_scaffold_5001791 Length=495 Score = 106 bits (57), Expect = 2e-22 Identities = 152/196 (78%), Gaps = 14/196 (7%) Strand=Plus/Plus Query 261 GGATATGTTATTACAAAGATCAATTTCGCTGATTATGG-CAATCCCACTGGT-ACATGTG 318 ||||||||||| | |||| || ||||| || ||||| ||| ||||||||| || |||| Sbjct 247 GGATATGTTATCGCTGAGATAAAATTCGCCGACTATGGCCAA-CCCACTGGTAAC-TGTG 304 Query 319 ----G-ACAC-TTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAA 372 | |||| ||| |||||| || ||||| |||| ||||| ||||| ||||||||| Sbjct 305 AAAAGAACACGCTTAAACGTGGAAACTGCGGCGCACCCGCTACTTTGAGGCTCGTCAAAA 364 Query 373 AGAATTGTCTTGGAAAAGA-GAAGTGTCACCTTTTG-GTTACGGATGAGATGTTTGGTCC 430 ||||||||||||||||||| ||| ||| ||| || || || |||||||||||||| Sbjct 365 AGAATTGTCTTGGAAAAGAAGAA-TGTTGG-TTTCCAGTAACAGACGAGATGTTTGGTCC 422 Query 431 GAGCAAGTGCAAAGGA 446 || | | || |||||| Sbjct 423 GACCCATTGTAAAGGA 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23864946042 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5