BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53080.1

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg898237 jgi|Araly1|898237|Al_scaffold_0005_2203                    699    0.0  
  Ahg348399 jgi|Araly1|348399|fgenesh1_pg.C_scaffold_5001791           106    2e-22


> Ahg898237 jgi|Araly1|898237|Al_scaffold_0005_2203
Length=468

 Score =  699 bits (378),  Expect = 0.0
 Identities = 439/469 (94%), Gaps = 2/469 (0%)
 Strand=Plus/Plus

Query  21   ATGGAAACTTTACAATGTCGTCATCAGCATGTCTTCATTTTGCTTCTTGTCCTATTTCAT  80
            ||||| |||||||| ||||||||| | |||| |||||||||| ||||| | |||||||||
Sbjct  1    ATGGATACTTTACATTGTCGTCATAATCATGGCTTCATTTTGATTCTTCTTCTATTTCAT  60

Query  81   TCCTCTCTGTTTGGTTTAGCTTCAAAGATCGATGTTTCTGACGATGCACGAGGCATCAGA  140
            || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   TCATCTCTGTTTAGTTTAGCTTCAAAGATCGATGTTTCTGATGATGCACGAGGCATCAGA  120

Query  141  ATCGACGGTGGCCAGAAACGTTTTCTAACTAATTCTCCTCAACATGGCAAGGAACATGCA  200
            |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  121  ATCGACGGTGACCAGAAACGTTTTCTCACTAATTCTCCTCAACATGGCAAGGAACATGTA  180

Query  201  GCGTGTACGAACGAAGAACCTGATCTCGGTCCGCTGACGCGTATTTCTTGCAATGAACCT  260
            ||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct  181  GCGTGTACGAATGAAGAACCTGATCTCGGTCCTCTGACGCTTATTTCTTGCAACGAACCT  240

Query  261  GGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCACTGGTACATGTGGA  320
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  241  GGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCAGTGGTACATGTGGA  300

Query  321  CACTTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGT  380
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CACTTTAGACACGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGT  360

Query  381  CTTGGAAAAGA-GAAGTGTCACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCAAGTG  439
            |||  |||||| || |||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct  361  CTTAAAAAAGAAGA-GTGTTACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCCACTG  419

Query  440  CAAAGGAGCTCCTATGCTCGCTGTTGAAACCACTTGTACAATAGCTTAG  488
            |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct  420  CAAAGGAGCTCCTAGGCTCGCTGTTGAAACCACTTGTACACTAGCTTAG  468


> Ahg348399 jgi|Araly1|348399|fgenesh1_pg.C_scaffold_5001791
Length=495

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 152/196 (78%), Gaps = 14/196 (7%)
 Strand=Plus/Plus

Query  261  GGATATGTTATTACAAAGATCAATTTCGCTGATTATGG-CAATCCCACTGGT-ACATGTG  318
            |||||||||||  |  |||| || ||||| || ||||| ||| ||||||||| || ||||
Sbjct  247  GGATATGTTATCGCTGAGATAAAATTCGCCGACTATGGCCAA-CCCACTGGTAAC-TGTG  304

Query  319  ----G-ACAC-TTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAA  372
                | ||||  ||| |||||| || ||||| ||||  |||||  ||||| |||||||||
Sbjct  305  AAAAGAACACGCTTAAACGTGGAAACTGCGGCGCACCCGCTACTTTGAGGCTCGTCAAAA  364

Query  373  AGAATTGTCTTGGAAAAGA-GAAGTGTCACCTTTTG-GTTACGGATGAGATGTTTGGTCC  430
            ||||||||||||||||||| ||| |||    |||   || || || ||||||||||||||
Sbjct  365  AGAATTGTCTTGGAAAAGAAGAA-TGTTGG-TTTCCAGTAACAGACGAGATGTTTGGTCC  422

Query  431  GAGCAAGTGCAAAGGA  446
            || | | || ||||||
Sbjct  423  GACCCATTGTAAAGGA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5