BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53100.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938208 jgi|Araly1|938208|scaffold_502399.1 1746 0.0
> Ahg938208 jgi|Araly1|938208|scaffold_502399.1
Length=1097
Score = 1746 bits (945), Expect = 0.0
Identities = 1049/1100 (95%), Gaps = 4/1100 (0%)
Strand=Plus/Plus
Query 113 TTAGACAGGAACGAAAAGGAATGCAAAAGATGAGAGTTTCGGGGTTTAGAGTTCTTCTCT 172
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 TTAGACAGGAAAGAAAAGGAATGCAAGAGATGAGAGTTACGGGGTTTAGAGTTCTTCTCT 60
Query 173 TGGTTTCTTGTTTCTTCTGCAAATCCAAAGGAGCTGTTGTTCCTGCACTCATCATGTTTG 232
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TGGTTTCTTGTTTCTTCTGCATATCCAAAGGAGCTATTGTTCCTGCACTCATCATGTTTG 120
Query 233 GCGACTCCATTGTTGACGTTGGCAACAACAATAACTTACTCAGCATTGTCAAATCCAACT 292
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGACTCCATTGTTGACGTTGGCAACAACAATAACTTACTCAGCATTGTCAAATCCAACT 180
Query 293 TTCTTCCTTACGGTAGAGACTTCATCGACCAAAGACCCACCGGAAGATTCTGCAACGGAA 352
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCTCCTTATGGCAGAGACTTCATCGACCAAAGACCCACCGGAAGATTCTGCAACGGAA 240
Query 353 AACTCGCTGTAGATTTCTCAGCCGAGTACCTTGGTTTCTCTTCATACCCACCTGCATTCC 412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACTCGCAGTAGATTTCTCAGCCGAGTACCTTGGTTTCTCTTCATACCCACCTGCATTCC 300
Query 413 TAAGCCGGGAAGCAAGCAACGAGAATATCCTGATCGGTGCCAACTTTGCATCAGCTTCTT 472
||||||| |||||||| ||||||| | |||||||||| ||||| ||||||||||||||||
Sbjct 301 TAAGCCGAGAAGCAAGTAACGAGACTCTCCTGATCGGCGCCAATTTTGCATCAGCTTCTT 360
Query 473 CAGGATACTATGATGCCACATCTGTTCCATTTGGCTCGATCTCCTTAACACGACAGCTGA 532
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 361 CAGGATACTATGATGCCACATCTGTTCCATTTGGCGCAATCTCCTTAACACGACAGCTGA 420
Query 533 GCTATTACAGGGCGTATCAAAATAGAGTAACGAGAATGATCGGGAGGGGGAACGCGCGCA 592
|||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||||
Sbjct 421 GCTATTACAGGGCGTATCAAAACAGAGTAACAAGAATGATCGGGAGGGAGAATGAGCGCA 480
Query 593 TACTGTTCTCTAGAGGTATCCACATTTTGAGTGCGGGATCTAGCGACTTTCTTCAGAATT 652
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GGCTGTTCTCTAGAGCTATCCACATTTTGAGTGCGGGATCTAGCGACTTTCTTCAGAACT 540
Query 653 ATTACATCAATCCTCTACTCAACATCCTAAATACACCTGATCAGTTCGCTGACATTCTCC 712
||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 541 ATTACATCAATCCCCTACTCAACATCTTAAATACACCTGACCAGTTCGCTGACATTCTCA 600
Query 713 TGAGATCCTTCTCAGAATTCATCCAGAATCTGTATGAACTAGGAGCAAGGAGAATCGGAG 772
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAGATCCTACTCAGAATTTATCCAGAATCTGTATGAACTAGGAGCAAGGAGAATCGGAG 660
Query 773 TGATATCGCTACCGCCGATGGGTTGCCTGCCTGCAGCTATCACTCTTTTCGGTGCAGGAA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGATATCGCTACCGCCGATGGGTTGCCTGCCTGCAGCTATCACTCTTTTCGGTGCAGGAA 720
Query 833 ACAAAAGTTGTGTTGAGAGACTGAACAATGATGCTATCATGTTCAATACTAAACTTGAGA 892
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 721 ACAAAAGTTGTGTTGAGAGACTGAACAACGATGCTATCATGTTCAATACCAAACTTGAGA 780
Query 893 ACACAACCCGGTTACTGATGAATAGACACTCAGGCCTCAGACTCGTCGCCTTTAATGTCT 952
|||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 781 CCACAACCCAGTTATTGATGAATAGACACTCAGGTCTCAGGCTCGTCGCCTTTAATGTCT 840
Query 953 ACCAACCTTTCCTGGACATCATCACCAACCCAACTGACAATGGATTCTTTGAAACAAAAA 1012
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 ATCAACCTTTCCTGGACATCATCACCAACCCAATTGACAATGGATTCTTTGAAACAAAAA 900
Query 1013 GGGCATGCTGCGGAACAGGGACAATAGAAACATCGTTCCTTTGCAATTCTCTATCCTTCG 1072
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 901 GGGCATGCTGCGGAACAGGAACAATAGAAACATCGTTCCTTTGCAATTCTCTATCCCTAG 960
Query 1073 GAACGTGTGTAAATGCCACAGGATATGTGTTTTGGGATGGATTTCATCCCACAGAGGCTG 1132
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 961 GAACGTGTGTAAATGCCACAGGATATGTGTTTTGGGATGGATTTCACCCCACAGAGGCTG 1020
Query 1133 TAAACGAGCTGTTGGCTGGTCAACTACTGGGTCAAGGGATTTCTCTAATCAATTGAATTG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TAAACGAGCTGTTGGCTGGTCAACTACTGGGTCAAGGGATTTCTCTAATCAATTGAATTG 1080
Query 1193 AGCTTCATTCCA-GTTGGAT 1211
|| | | | ||| |||||||
Sbjct 1081 AG-T-CGT-CCAAGTTGGAT 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5