BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53110.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323856 jgi|Araly1|323856|fgenesh1_pm.C_scaffold_5001400 2401 0.0
> Ahg323856 jgi|Araly1|323856|fgenesh1_pm.C_scaffold_5001400
Length=1488
Score = 2401 bits (1300), Expect = 0.0
Identities = 1428/1491 (96%), Gaps = 3/1491 (0%)
Strand=Plus/Plus
Query 132 ATGGCGGATACGGTAGAGAAAGTTCCCACCGTTGTTGAGTCATCTTCATCATCCACCGTT 191
||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct 1 ATGGCGGATACTGTAGAGAAAGTTCCCACC---GTTGAGTCATCTTCATCTTCCTCCGTT 57
Query 192 GAAGCATCTAATAGCGCCGAGAAGACTGAGCCCACGACGGAGAAGAAAAAGTGGGGCGAT 251
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAAGCATCTATTAGCACCGAGAAGACTGAGCCCACGACGGAGAAGAAAAAGTGGGGCGAT 117
Query 252 GTTGAAGATGATGATGATGAAGAAGAAGCTGTATCGGAGCTTAATTCATTGAGCATTAAG 311
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 118 GTTGAGGATGATGATGATGAAGAAGAAGCAGTATCGGAGCTTAATTCTTTGAGCATTAAG 177
Query 312 GAAGAAGAGAAACCTGATTCTATTCTTGAGGAACCTGAAGATTCTAACATCAAAGCTGTT 371
||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 178 GAAGAAGAGAAACGTGATTCTGTGCTTGAGGAACCTGAAGATTCAAACATCAAAGCTGTT 237
Query 372 ACTTCTGGTGACACACCATATACATCAGCAAGTAGATTTGAAGACTTGAACTTGTCACCT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACTTCTGGTGACACACCATATACATCAGCAAGTAGATTTGAAGACTTGAACTTGTCACCT 297
Query 432 GAATTGATGAAAGGCTTGTACGTTGAGATGAAATTCGAAAAGCCTAGCAAGATCCAAGCT 491
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 298 GAATTGATGAAAGGCTTGTATGTTGAGATGAAATTCGAAAAGCCGAGCAAGATCCAAGCA 357
Query 492 ATTAGTTTGCCTATGATAATGACGCCGCCACACAAGCATCTGATTGCCCAGGCTCATAAC 551
|| |||||||| ||||| ||||||||||| ||||||||| ||||||| ||||| ||||||
Sbjct 358 ATCAGTTTGCCCATGATTATGACGCCGCCTCACAAGCATTTGATTGCTCAGGCGCATAAC 417
Query 552 GGATCTGGAAAGACGACTTGTTTCGTTCTTGGAATGTTGAGTCGTGTTGATCCCACATTG 611
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 418 GGATCTGGAAAGACGACTTGTTTCGTTCTTGGAATGTTGAGTCGGGTTGATCCGACACTG 477
Query 612 AGAGAGCCTCAAGCTCTCTGTATTTGTCCCACTAGAGAATTAGCTAATCAGAATATGGAA 671
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAGAACCTCAAGCGCTCTGTATTTGTCCCACTAGAGAATTAGCTAATCAGAATATGGAA 537
Query 672 GTTCTTCAGAAGATGGGGAAGTTTACTGGGATCACTGCTGAGTTGGCTGTGCCTGACTCA 731
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 538 GTTCTTCAGAAGATGGGGAAGTATACTGGGATCACTGCTGAGTTGGCTGTGCCAGAGTCA 597
Query 732 ACGAGAGGTGCACCGGCGGCAACAAGAGGAGCTCCTGTTTCTGCTCATGTTGTGATTGGC 791
|||||||| ||| | |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 598 ACGAGAGGCGCATCACCGGCCCCAAGACGAGCTCCTGTTTCTGCTCATGTTGTGATTGGT 657
Query 792 ACCCCTGGAACGCTTAAGAAATGGATGGCATTTAAGAGACTAGGTCTAAATCATTTGAAG 851
|||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 658 ACCCCTGGAACGCTTAAGAAGTGGATGGCTTTTAAGAAACTAGGTCTAAATCATTTGAAG 717
Query 852 ATTCTGGTTTTTGATGAGGCTGACCATATGCTTGCTACGGATGGGTTTAGGGATGATTCC 911
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 ATTCTTGTTTTTGATGAGGCTGACCATATGCTTGCTACGGATGGCTTTAGGGATGATTCC 777
Query 912 TTGAAGATAATGAAAGACATTGGGAGAGTTAATCCCAATTTCCAGGTTCTTCTTTTCTCG 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGAAGATAATGAAAGACATTGGGAGAGTTAATCCCAATTTCCAGGTTCTTCTTTTCTCG 837
Query 972 GCAACTTTTAACGAAACTGTCAAAGATTTTGTTGCGCGGACAGTCAAAGATCCCAACCAA 1031
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 GCAACTTTTAACGAAATTGTCAAAGATTTTGTTGCAAGGACAGTCAAAGATCCCAACCAA 897
Query 1032 TTGTTTGTCAAAAGAGAGGATCTGGCTTTGGACTCGGTGAAGCAGTATAAAGTTGTTTGC 1091
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 TTGTTTGTCAAAAGAGAGGATCTGGCTTTGGACTCAGTGAAGCAGTATAAAGTTGTTTGC 957
Query 1092 CCGAAGGAGCAAAACAAGATCGAAGTCATCAAGGATCAGATTATGGAGCTTGGGGATATT 1151
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 CCAAAGGAGCAAAACAAGATCGAAGTCATCAAGGATCAGATTATGGAGCTTGGTGATATT 1017
Query 1152 GGGCAAACCATTATCTTTGTGAAAACAAAAGCGTCTGCTCAAAAGGTGCACAAAGCCCTT 1211
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1018 GGGCAAACCATTATCTTTGTGAAAACAAAAGCGTCTGCTCACAAGGTACACAAAGCCCTT 1077
Query 1212 GCGGAAATGGGATATGACGTTACCAGTGTCCATGGTAATCTGACTGAATCGGACAGGGAT 1271
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1078 GCGGAAATGGGATATGACGTTACCAGTGTCCATGGTAATCTGTCTGAATCGGACAGGGAT 1137
Query 1272 AAGATAGTTAAAGAGTTTAAAGAATGCCTTACTCAAGTGCTCATTGCTACCGATGTCATT 1331
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGATAGTTAAAGAGTTTAAAGATTGCCTTACTCAAGTGCTCATTGCTACCGATGTCATT 1197
Query 1332 GCAAGAGGTTTTGACCAACAGCGGGTGAATTTGGTTGTCAATTATAATCTTCCCACTAAA 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GCAAGAGGTTTTGACCAACAGCGGGTGAATTTGGTTGTCAATTATAATCTTCCCACTAAA 1257
Query 1392 TATGAAACTGGAGAGCCAGATTATGAGGTGTACCTTCACAGGGTTGGGAGAGCTGGCCGG 1451
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TATGACACCGGAGAGCCAGATTATGAGGTGTACCTTCACAGGGTTGGGAGAGCTGGCCGG 1317
Query 1452 TTTGGTCGCAAAGGAGCGGTTTTCAACTTGCTGCTTGATGATGGCTGGGATAAAGAGGTG 1511
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTTGGTCGTAAAGGAGCGGTATTCAACTTGCTGCTTGATGATGGCTGGGATAAAGAGGTG 1377
Query 1512 ATGGAGAAGATCGAGAAGTATTTTGAAGCAAATGTTAAGGAGATCAAGTCGTGGAACTCA 1571
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 ATGGAGAAGATCGAGAAGTATTTTGAAGCAAATGTTAAGGAGATCAAGTCTTGGAACTCA 1437
Query 1572 GAGGAAGAGTATAAGAGTGCATTAAAGGAAGCTGGCCTGCTGGACGAGTGA 1622
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1438 GAGGAAGAGTATAAGAGTGCATTAAAGGAAGCTGGCCTGCTCAACGAGTGA 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5