BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53120.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938210 jgi|Araly1|938210|scaffold_502401.1 1116 0.0
> Ahg938210 jgi|Araly1|938210|scaffold_502401.1
Length=694
Score = 1116 bits (604), Expect = 0.0
Identities = 659/686 (96%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 72 GGCGAATTCTAGAAACGATGTTCAATTTCTGGGGATCAAAAGACCAACAACAAGGGCAAT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GGCGAATTCTAGAAACGATGTTCAATTTCTGGGGATCAAAAGACCAACAACAAGGGCAAT 63
Query 132 CTCGTCCTCAGGAAGCTTCTTCACAGTCGCCATGGTACTCGCCTTCTTTAGTTAGCTCGC 191
||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 64 CTCGTCCTCCGGAAGCTTCTTCACAGTCGCCATGGTATTCACCTTCTTTAGTCAGCTCGC 123
Query 192 CAAGCTCATCCCGGCCTCAAAGTTCAGGTCAGATTTCAGCACAA-GTATCACCGGGTGAA 250
||||||||||||||||||||| ||||||||||||| |||| || || ||||| ||||||
Sbjct 124 CAAGCTCATCCCGGCCTCAAACTTCAGGTCAGATTGGAGCA-AATGTTTCACCCGGTGAA 182
Query 251 GCAGCTGGCATTATCGTCTTCTTGAAAGACAAAAGCGTGGATGAACTCAGGAAGCTTCTC 310
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 GCAGCTGGCATTATCGCCTTCTTGAAAGACAAAAGCGTGGATGAGCTCAGGAAGCTTCTA 242
Query 311 TCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAAT 370
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 TCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAATCCAGAAT 302
Query 371 AATATCAAAGATGAGCTCCGTAGAGAAACATTGCAGCTAGCTAGAGACAACTTGGAGAAG 430
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 303 AATATCAAAGATGAGCTCCGCAGAGAAACATTGCAGCTAGCTAGAGAGAACTTGGAGAAG 362
Query 431 GAGCCACAGATAATGGAGCTCAGAAACCAATGCAGAATTATCCGTACAACTGAGCTCGCA 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 363 GAGCCACAGATAATGGAGCTCAGAAACCAATGCAGAATTATCCGTACAACTGAGCTTGCA 422
Query 491 ACTGCGCAAGAAAAGCTTAATGAGCTTGAGAGGCAAAAAGAAGAGATCCTCAAATTCTAC 550
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GCCGCGCAAGAAAAGCTTAATGAGCTTGAGAGGCAAAAAGAAGAGATCCTCAAATTCTAC 482
Query 551 TCCCCTGGTTCTCTTCTTCATAAACTTCAAGAGGCTATGAATCAGGTGGATGAAGAATCC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCCCCTGGTTCTCTTCTTCATAAACTTCAAGAGGCTATGAATCAGGTGGATGAAGAATCC 542
Query 611 GAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGATACAGCAGCATTTGTGCAGAAA 670
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 543 GAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGACACAGTAGCATTTGTGCAGAAA 602
Query 671 TACAAGAAGCTTCGTACTACCTATCATCGACGAGCATTGATCCATCTTGCCGCTAAAACG 730
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 603 TACAAGAAGCTGCGAACTACCTATCATCGACGCGCATTGATCCATCTTGCCGCTAAAACC 662
Query 731 TCAAACATTTGAGATTAAAAAGCTTT 756
|||||||||||| |||||||||||||
Sbjct 663 TCAAACATTTGAAATTAAAAAGCTTT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5