BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53150.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938213 jgi|Araly1|938213|scaffold_502404.1 2416 0.0
> Ahg938213 jgi|Araly1|938213|scaffold_502404.1
Length=1567
Score = 2416 bits (1308), Expect = 0.0
Identities = 1457/1529 (95%), Gaps = 10/1529 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCAAAAATAGTTTCAAAAGCCAAAAGACTTCACTTTGTTTTGATCCCTCTCATG 60
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24 ATGGAATCAAAACTAGTTTCAAAAGCCAAAAAACTTCACTTTGTTTTGATCCCTCTCATG 83
Query 61 GCTCAAGGGCATCTGATCCCCATGGTCGACATCTCCAAGATTCTTGCACGACAAGGCAAC 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 84 GCTCAAGGGCATCTGATCCCTATGGTCGACATCTCCAAGATTCTTGCGCGACAAGGCAAC 143
Query 121 ATCGTTACCATAGTTACAACCCCTCAAAATGCTTCTAGGTTTGCGAAGACAGTTGACCGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 ATCGTTACCATAGTTACAACCCCTCAAAATGCTTCTAGGTTTGCGAAGACAGTTGACCGA 203
Query 181 GCAAGATTAGAGTCGGGTCTCGAA---ATCAATGTCGTTAAATTTCCAATTCCTTACAAA 237
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 204 GCAAGATCGGAGTCGGGTCTTAAAGTGATCAATGTCGTTAAATTTCCAATTCCTTACAAA 263
Query 238 GAATTCGGTCTTCCCAAAGATTGTGAGACTCTGGACACTTTGCCCTCCAAAGACCTCCTA 297
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 264 GAATTCGGTCTTCCCAAAGATTGTGAGACTCTCGACACTTTGCCCTCTAAAGACCTCCTA 323
Query 298 C-GAAGATTCTATGACGCTGTGGATAAACTCCAAGAGCCCATGGAACGGTTTCTTGAGCA 356
| ||| |||||||||||||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 324 CGGAA-ATTCTATGACGCTGTGGACAAACTTCAGGAGCCTTTGGAACGGTTTCTTGAGCA 382
Query 357 ACAAGATATCCCTCCAAGTTGCATAATCTCCGATAAATGCCTTTTTTGGACGTCAAGAAC 416
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 383 ACACGATATCCCTCCAAGTTGCATAATCTCCGATAAATGCCTTTTTTGGACGTCAAAAAC 442
Query 417 CGCAAAGAGGTTCAAAATCCCGAGGATCGTGTTCCATGGAATGTGTTGCTTCTCTCTTTT 476
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 443 CGCAAAGAGGTTCAAGATCCCGAGGATCGTTTTCCATGGAATGTGTTGCTTCTCTCTTTT 502
Query 477 GAGTTCGCACAATATCCATCTTCATAGCCCGCACCTCTCGGTTTCTTCGGCCGT-AGAGC 535
|||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 503 GAGTTCGCACAACGTCCATCTTCATAGCCCGCACCTTTCGGTTTCTTCGGCC-TCAGAGC 561
Query 536 CATTCCCTATACCAGGAATGCCACATAGGATTGAGATAGCTAGAGCTCAGTTACCTGGTG 595
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 562 CATTCTCTATACCAGGAATGCCACATAGGATTGAGATAGCTAGAGATCAGTTACCGGGTG 621
Query 596 CTTTTGAGAAGTTAGCAAATATGGATGACGTTCGCGAGAAGATGCGTGAATCTGAATCAG 655
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CGTTTAAGAAGTTAGCAAATATGGATGACGTTCGCGAGAAGATGCGTGAATCTGAATCAG 681
Query 656 AAGCCTTTGGGGTTATTGTTAATAGCTTCCAGGAATTGGAGCCTGGCTATGCAGAGGCCT 715
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 682 AAGCCTTTGGGGTTATTGTTAATAGCTTCCAAGAATTGGAGCCTGGCTATGCAGAGGCCT 741
Query 716 ACGCTGAGGCCATCAATAAGAAGGTATGGTTCGTTGGACCCGTTTCTTTATGCAACGACC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ACGCTGAGGCCATCAATAAGAAGGTATGGTTCGTTGGACCCGTTTCTTTATGCAACGACC 801
Query 776 GTATGGCTGACCTATTCGATAGAGGAAGTAATGGTAACATCGCAATAAGCGAGACCGAAT 835
|| |||| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct 802 GTGTGGCGGACCTATTCGATAGAGGAAACAACGGTAACATCGCGATAAGTGAGACCGAAT 861
Query 836 GCTTGCAGTTTCTTGACTCGATGAGACCAAGGTCAGTCTTATATGTTTCTCTTGGTAGCC 895
||||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 862 GCTTGCAGTTTCTCGACTCGATGAAACCAAGGTCTGTCTTATATGTTTGTCTTGGTAGCC 921
Query 896 TCTGTCGACTAATACCTAATCAATTGATAGAACTAGGTTTAGGGTTAGAAGAATCGGGAA 955
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 922 TCTGTCGACTAATACCTATTCAACTAATAGAACTAGGTTTAGGGTTAGAAGAATCGGGAA 981
Query 956 AACCCTTTATTTGGGTGATAAAGACCGAGGAAAAACACATGATTGAGCTAGACGAATGGC 1015
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 982 AACCCTTTATTTGGGTGATCAAGACCGAGGAAAAACACATGAATGAGCTAGACGAATGGC 1041
Query 1016 TAAAACGCGAAAATTTTGAAGAGCGAGTTAGAGGAAGAGGGATAGTAATAAAGGGTTGGA 1075
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1042 TAAAACGCGAAAATTTTGAAGAGCGAGTTAGAGGAAGAGGGATAATAATAAGGGGTTGGA 1101
Query 1076 GTCCTCAGGCTATGATACTCTCACATGGTTCAACCGGCGGGTTCTTGACTCATTGCGGTT 1135
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 1102 GTCCTCAGGCTATGATACTTTCACATGGTTCAACCGGAGGGTTCTTAACTCATTGCGGTT 1161
Query 1136 GGAATTCTACAATAGAAGCGATATGTTTTGGTGTACCAATGATCACATGGCCGTTGTTCG 1195
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GGAACTCTACAATAGAAGCGATATGTTTTGGTGTACCAATGATCACATGGCCGTTGTTCG 1221
Query 1196 CTGAACAATTTCTCAATGAGAAACTCATCGTGGAGGTTTTGAACATCGGGGTTAGGGTTG 1255
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1222 CTGAACAATTCCTCAATGAGAAACTAATCGTGGAGGTTTTGAATATCGGGGTTAGGGTTG 1281
Query 1256 GGGTGGAGATTCCGGTGAGATGGGGAGACGAGGAGAGACTTGGAGTGTTGGTCAAGAAAC 1315
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1282 GGGTGGACATTCCGGTGAGATGGGGAGACGAGGAGAGGCTTGGAGTGTTGGTCAAGAAAC 1341
Query 1316 CGAGTGTTGTGAAAGCTATAAAGCTTTTGATGGACCAAGATTGTCAACGTGTAGACGAAA 1375
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1342 AGAGTGTTGTGAAAGCTATAAAGCTTTTGATGGACGAAGATTGTCAACGTGTAGACG--A 1399
Query 1376 ATGATGATGATAATGAATTCGTGAGACGAAGGAGACGTATTCAAGAACTTGCAGTAATGG 1435
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 A-GATGATGATAGTGAATTCGTGAGACGAAGGAGACGTATTCAAGAACTTGCAGTAATGG 1458
Query 1436 CGAAAAAGGCTGTGGAAGAAAAGGGATCTTCGAGTATTAACGTTTCAATTTTAATCCAAG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 CGAAAAAGGCTGTGGAAGAAAAGGGATCTTCGAGTATTAACGTTTCAATTTTAATCCAAG 1518
Query 1496 ATGTTTTGGAGCAATTGAGTCTCGTGTAG 1524
||||||| ||||| |||||||| | ||||
Sbjct 1519 ATGTTTTAGAGCACTTGAGTCTTGAGTAG 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5