BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53160.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485691 jgi|Araly1|485691|fgenesh2_kg.5__1683__AT3G53160.1 2290 0.0
> Ahg485691 jgi|Araly1|485691|fgenesh2_kg.5__1683__AT3G53160.1
Length=1494
Score = 2290 bits (1240), Expect = 0.0
Identities = 1412/1496 (94%), Gaps = 7/1496 (0%)
Strand=Plus/Plus
Query 4 TGTAAGATCTTCTACAATGTGTTCTCATGATCCTCTTCACTTCGTCGTAATACCCTTTAT 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTAACATCTTCTACAATGTGTTCTCATGATCCTCTTCACTTCGTCGTAATACCCTTTAT 60
Query 64 GGCCCAAGGCCATATGATCCCATTGGTCGACATCTCTAGGCTCTTGTCCCAGCGCCAAGG 123
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||
Sbjct 61 GGCCCAAGGCCATATGATCCCATTGGTTGACATCTCCAGGATCTTGTCCCAGCGTCAAGG 120
Query 124 CGTGACTGTCTGCATCATCACAACTACTCAAAATGTAGCCAAGATCAAGACTTCACTCTC 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTGACTGTCTCCATCATCACAACTACTCAAAATGTAGCCAAGATCAAGACTTCACTCTC 180
Query 184 ATTTTCCTCTTTGTTTGCGACTATCAACATCGTTGAAGTTAAGTTTCTGTCTCAACAAAC 243
|| ||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||| |
Sbjct 181 ATCTTCCTCTTTGTTTCCGACCATCAACATCGTTGAAGTTAAGTTTCCGTCTCAGCAAGC 240
Query 244 GGGTTTGCCAGAAGGGTGCGAGAGTTTAGATATGTTGGCTTCAATGGGCGATATGGTGAA 303
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 241 AGGTTTGCCAGAAGGGTGCGAGAGTGTAGATATGTTGGCTTCAATGGGCGATTTGGTGAA 300
Query 304 GTTCTTTGATGCTGCCAACTCACTTGAGGAGCAAGTTGAGAAAGCTATGGAAGAGATGGT 363
||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GTTCTTTGACGCGGCCAACTCCCTTGAGGAGCAAGTTGAGAAAGCTATGGAGGAGATGGT 360
Query 364 TCAGCCGCGGCCAAGCTGCATCATTGGAGACATGAGCCTTCCTTTCACTTCAAGACTTGC 423
|||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TCAGCCACGACCGAGCTGCATCATCGGAGACATGAGCCTTCCTTTCACTTCAAGACTTGC 420
Query 424 CAAGAAATTCAAGATCCCCAAACTTATCTTCCATGGGTTTTCTTGTTTCAGCCTCATGT- 482
||| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CAAAAAATTGAAGATCCCTAAACTTCTCTTCCATGGGTTTTCTTGTTTCAGCCTCATGTG 480
Query 483 CTATACAAGTGGTTCGAGAAAGCGGGATCTTGAAA-ATGATAGAATCAAACGACGAGTAT 541
| ||||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||||
Sbjct 481 C-ATACAAGTGGTTCGACAAAGCGGGATCTT-AAACGTTATAGAATCTAACGACGAGTAT 538
Query 542 TTTGATTTGCCCGGCTTGCCTGACAAAGTTGAGTTCACGAAACCTCAGGTCTCTGTGTTG 601
|| || |||||| |||||||||| | |||||||||||| |||||||||||||||||| ||
Sbjct 539 TTCGAGTTGCCCAGCTTGCCTGATAGAGTTGAGTTCACTAAACCTCAGGTCTCTGTGCTG 598
Query 602 CAACCTGTTGAAGGAAATATGAAAGAGAGTACGGCCAAGATTATTGAAGCTGATAATGAC 661
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 CAGCCTGTTGAAGGAAATATGAAAGAGAGTACGGAGAAGATTATTGAAGCTGATAATGAC 658
Query 662 TCTTATGGTGTTATTGTGAACACTTTTGAAGAGTTAGAGGTTGATTATGCAAGAGAATAT 721
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTTATGGTGTTATTGTGAACAGTTTTGAAGAGTTAGAGGTTGATTATGCAAGAGAATAT 718
Query 722 AGGAAAGCAAGGGCTGGAAAAGTTTGGTGCGTTGGACCTGTTTCCTTGTGCAATAGGTTA 781
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 AGGAAAGCAAGGGCTGGGAAAGTTTGGTGCGTTGGACCTGTTTCCTTGTGCAATAAGTTA 778
Query 782 GGGTTAGACAAAGCTAAAAGAGGAGATAAGGCTTCTATTGGTCAAGACCAATGTCTTCAA 841
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 779 GGGTTAGACAAAGCTAAAAGAGGAGATAAGGCTTCCATTGGTCAAGACCAATGTCTTCAA 838
Query 842 TGGCTTGACTCTCAAGAAACTGGTTCAGTGCTCTACGTTTGCCTTGGAAGTCTATGTAAT 901
||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 839 TGGCTAGACTCTCAAGAAAGGGGTTCGGTGCTCTACGTTTGCCTTGGAAGTCTATGTAAT 898
Query 902 CTTCCCTTGGCTCAGCTCAAAGAGCTGGGACTAGGCCTTGAGGCATCTAATAAACCTTTC 961
|||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 899 CTTCCCTTGGCTCAGCTCAAAGAGCTAGGACTAGGTCTTGAGGAATCTAATAAACCTTTC 958
Query 962 ATATGGGTTATAAGAGAATGGGGAAAATATGGAGATTTAGCAAATTGGATGCAACAAAGC 1021
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||||||
Sbjct 959 ATATGGGTTATAAGAGAATGGGGACAACACGGAGATTTAGCAAAGTGGATGCAACAAAGC 1018
Query 1022 GGATTTGAAGAGCGGATCAAAGATAGAGGACTGGTGATCAAAGGTTGGGCGCCGCAAGTT 1081
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1019 GGATTCGAAGAGCGGATCAAAGATAGAGGACTTGTGATCAAAGGTTGGGCGCCGCAAGTT 1078
Query 1082 TTCATCCTCTCACACGCATCCATTGGAGGGTTTTTGACTCACTGTGGATGGAACTCGACA 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTCATCCTCTCACACGCATCCATTGGAGGGTTTTTGACTCACTGTGGATGGAACTCGACT 1138
Query 1142 CTAGAAGGAATTACTGCAGGAGTTCCATTATTGACATGGCCTTTGTTTGCTGAACAATTC 1201
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1139 TTAGAAGGAATTACTGCAGGAGTACCATTATTGACATGGCCTTTATTTGCTGAACAATTC 1198
Query 1202 TTGAATGAGAAGTTAGTTGTGCAGATACTAAAAGCAGGGTTAAAGATAGGAGTAGAGAAA 1261
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTGAATGAGAAGTTAATTGTGCAGATACTAAAAGCAGGGTTAAAGATAGGAGTAGAGAAA 1258
Query 1262 T--TG-ATGAAATATGGAAAAGAAGAGGAGATAGGAGCGATGGTGAGCAGAGAATGTGTG 1318
| | ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 1259 TCATCTATGAAATATGGAAAAGAAGAGGAGATAGGAGTGATGGTGAGTAGAGAAAGTGTG 1318
Query 1319 AGAAAAGCTGTGGATGAGCTAATGGGTGATAGTgaagaagcagaagagagaagaagaaAA 1378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 AGAAAAGCTGTGGATGAGCTAATGGGTGATAGTGAAGAAGCAGAAGATAGAAGAAGAAAA 1378
Query 1379 GTTACAGAACTTAGTGACTTGGCAAATAAGGCTTTGGAAAAAGGAGGATCTTCAGATTCT 1438
| || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 GCTAAAGAACTTAGTGAATTGGCAAATAAGGCTTTGGAAGGAGGAGGATCTTCAGATTCT 1438
Query 1439 AATATCACATTGCTCATTCAAGATATTATGGAGCAATCACAAAATCAATTTTAAAT 1494
||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1439 AATATCACATTACTCATTCAAGACATTATGGAGCAATCACAAAATCAAATTTGAAT 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5