BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53170.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485692 jgi|Araly1|485692|fgenesh2_kg.5__1684__AT3G53170.1 1177 0.0
> Ahg485692 jgi|Araly1|485692|fgenesh2_kg.5__1684__AT3G53170.1
Length=1320
Score = 1177 bits (637), Expect = 0.0
Identities = 729/774 (94%), Gaps = 4/774 (1%)
Strand=Plus/Plus
Query 151 ATGTGTTCGACAAAGGTCCCCAACGAACGTACAGAGAAAATGAATTCTGGTTTGATCTCA 210
|||||||||||||| |||||||||||||||| || ||||||||| |||||| | ||||||
Sbjct 1 ATGTGTTCGACAAAAGTCCCCAACGAACGTATAGGGAAAATGAACTCTGGTCTCATCTCA 60
Query 211 ACAAGACACCAAGTAGATCCTAAGAAAGAATTGTCTCGGATTCTGAGAACAGATGCTGCT 270
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAGACACCAAATAGATCCTAAGAAAGAATTGTCTCGGATTCTGAGAACAGATGCTGCT 120
Query 271 GTGAAGGGCATTGAGAGGAAAGCCAATTCCGAAAAGTACTTAACTTTATGGCCAAAAGCT 330
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTGAAGGGCATTGAGAGGAAAGCCAACTCCGAAAAGTACTTAACTTTATGGCCAAAAGCT 180
Query 331 GTTCTAGAAGCTCTTGACGAAGCTATCAAAGAGAATCGATGGCAGTCTGCTCTCAAGATT 390
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCTTGAAGCTCTTGAAGAAGCTATCAAAGAGAATCGATGGCAGTCTGCTCTCAAGATT 240
Query 391 TTCAATCTTCTTAGGAAGCAGCATTGGTATGAACCAAGATGCAAAACTTATACAAAGCTG 450
||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 TTCCATCTTCTTAGGAAGCAGCATTGGTATGAACCAAGATGCAAAACATACACAAAGCTA 300
Query 451 TTTAAAGTGCTTGGGAATTGTAAACAGCCTGATCAAGCCAGCTTGCTTTTCGAAGTTATG 510
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTAAAGTGCTTGGGAATTGCAAACAGCCTGATCAAGCCAGCTTGCTTTTCGAAGTTATG 360
Query 511 TTATCTGAAGGATTGAAACCAACCATTGATGTGTATACCTCTCTTATCTCTGTTTATGGC 570
|| ||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 361 TTGTCTGAAGGACTGAAACCCACCATTGATGTGTATACGTCTCTTATCGCTGTTTATGGC 420
Query 571 AAAAGCGAGCTTCTAGACAAGGCGTTTTCTACACTTGAGTATATGAAATCTGTTAGTGAC 630
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 421 AAAAGCGAGCTTCTAGACAAGGCGTTTTCTACGCTTGAGTATATGAAATCGGTTAGTGAT 480
Query 631 TGCAAGCCAGATGTGTTCACCTTTACTGTTCTCATCAGTTGTTGCTGCAAACTGGGTCGG 690
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 481 TGCAAGCCAGATGTGTTCACCTTTACTGTTCTCATAAGATGTTGCTGCAAACTTGGTCGG 540
Query 691 TTTGATCTGGTTAAAAGTATCGTTCTTGAGATGTCGTATCTTGGAGTTGGATGCAGCACG 750
||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 541 TTTGATCTGGTTAAACGTATCATTCTTGAGATGTCATATCTCGGAGTTGGATGCAGCACG 600
Query 751 GTTACTTACAATACTATTATTGATGGGTATGGAAAGGCTGGAATGTTTGAGGAAATGGAA 810
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 601 GTTACTTACAATACTATTATTGATGGGTATGGAAAGGCCGGCTTGTTTGAGGAAATGGAA 660
Query 811 AGTGTTCTGGCTGATATGATCGAGGACGGAGATTCTCTTCCGGATGT-TTGTACGCTTAA 869
| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 661 AATGTTCTGGCTGATATGATCGAGGATGGAGATTCTCTTCCGGATGTCTTC-ACGCTTAA 719
Query 870 CTCGATCATTGGGTCATATGGAAATGGTCGCAACATGAGGAAGATGGAGAGCTG 923
|||||| |||||||| | ||||||||| ||| || ||||||||||||||||||
Sbjct 720 CTCGATAATTGGGTCGTC-GGAAATGGTGGCA-CACGAGGAAGATGGAGAGCTG 771
Score = 822 bits (445), Expect = 0.0
Identities = 489/511 (96%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 961 ATCACTACATTTAACATACTGATCCTGTCATTTGGAAAAGCTGGTATGTATAAGAAGATG 1020
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 778 ATCACTACATTTAACATACTGATCCTGTCATTTGGAAAAACTGGAATGTATAAGAAGATG 837
Query 1021 TGCTCTGTTATGGATTTTATGGAGAAAAGGTTCTTCTCCCTGACGACTGTCACTTACAAT 1080
|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGCTCGGTAATGGATTTCATGGAGAAAAGGTTCTTCTCCCTGACGACTGTCACTTACAAT 897
Query 1081 ATAGTGATTGAGACGTTTGGAAAAGCTGGAAGAATTGAGAAAATGGATGATGTATTCAGG 1140
|||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 898 ATAGTGATCGAGACGTTTGGAAAAGCTGGAAAAATCGAGAAAATGGATGATGTATTCAGG 957
Query 1141 AAAATGAAGTATCAAGGAGTGAAACCAAACTCAATCACTTATTGTTCGCTTGTTAACGCG 1200
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 958 AAAATGAAGTATCAAGGAGTGAAACCAAACTCAATCTCTTATTGTTCGCTTGTCAACGCG 1017
Query 1201 TATAGCAAAGCAGGTCTTGTCGTTAAGATAGATTCGGTTTTGAGGCAAATTGTGAATTCA 1260
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1018 TATAGCAAAGCTGGTCTTGTCGGTAAGATAGATTCGATTTTGAGGCAAATTGTGAATTCA 1077
Query 1261 GATGTGGTACTGGATACACCGTTCTTCAATTGCATAATCAATGCATATGGTCAGGCTGGT 1320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 GATGTGGTACTGGATACACCGTTCTTCAATTGCATAATCAATGCATACGGTCAGGCTGGT 1137
Query 1321 GATTTGGCTACAATGAAAGAATTATACATACAAATGGAAGAGAGAAAATGTAAGCCTGAT 1380
|||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATTTGGCCACGATGAAGGAACTATACATACAAATGGAAGAGAGAAAATGTAAGCCTGAT 1197
Query 1381 AAAATCACTTTTGCTACTATGATCAAAACCTATACTGCTCATGGGATATTCGATGCAGTC 1440
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1198 AAAATCACTTTTGCGACTATGATCAAAACCTATACGGCTCATGGGATATTCGATGCAGTC 1257
Query 1441 CAGGAACTCGAGAAACAAATGATTTCCTCTG 1471
||||||||||||||||||||||||||| |||
Sbjct 1258 CAGGAACTCGAGAAACAAATGATTTCCACTG 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5