BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53190.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485694 jgi|Araly1|485694|fgenesh2_kg.5__1686__AT3G53190.1 2649 0.0
> Ahg485694 jgi|Araly1|485694|fgenesh2_kg.5__1686__AT3G53190.1
Length=1746
Score = 2649 bits (1434), Expect = 0.0
Identities = 1658/1761 (94%), Gaps = 36/1761 (2%)
Strand=Plus/Plus
Query 1 AGTGGAAAACAACTTCACTCTCTCTCTTC-------a-aaaagaaaaacaaaaatacaaa 52
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 AGTGGAAAACAACTTCACTCTCTCTCTTCAAAAAGAACAAAAGAAAAACAAAAATACAAA 60
Query 53 agccaaggaaagccattattacaaaagcaataacacactgtaaaaaagcCACTCACGAAC 112
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCCAA-GAAAGCCATTATTACAAAAGCAATAACACACTGTAAAAAAGCCACTCACGAAC 119
Query 113 ACTCCTCAGTAACCagagagagaagaagaagaaCAACAAGCCATGTCTTAACTC---TTA 169
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 120 ACTGGTCAGTAACCAGAGAGAGAAGAAGAAG---AACAAGCCATGTCTTAACTCTTATTA 176
Query 170 ACTAATCTCTTCTTCTCCCTCCATTTCACCAACCAAAAACCCTAAAATCCTTAAAATCAC 229
|||| ||||||||||||||||| ||| || ||||||||||||| ||| | |||
Sbjct 177 ACTACTCTCTTCTTCTCCCTCCTTTTAACTAACCAAAAACCCT-AAA----T----TCAT 227
Query 230 AAGTTTCTTCAGCAATGATGCTTCAAAGAAGCTGCATTGTACTTTTCTTCTCTCTTTTTC 289
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 228 AAGTTTCTTCAACAATGATGCTTCAAAGAAGCTGCATTGTACTTCTCTTCTCTCTTTTTC 287
Query 290 TGTTGGTTCCACAAATGGTTTTCTCGATGCTCAACAGAACTCTTCTTCTCATACCACATC 349
|||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||
Sbjct 288 TGTTCACTCCACAAATGGGTTTCTCCATGCTCAACAGAACTCTACTTCTCATACCACATC 347
Query 350 CTGACCCGGAACTAGTCGCTTATCAAGTTCAGTGGAAAGTAAATGCATCTATAACAAGGC 409
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 348 CTGACCCGGAACTAGTCGCTTATGAAGTTCAGTGGAAAGTAAATGCATCTATAACAAGAC 407
Query 410 GTCAAGCTCTAGACACGACGGACCAGGCCGGTTCGACCCCGTG-TATCACCGGTAACCCA 468
|||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||
Sbjct 408 GTCAAGCTCTAGACACGACGGACCAGGCCGGTTCAAACCCGTGCT-TCACCGGTAACCCA 466
Query 469 ATCGATGACTGTTGGAAATGTGACCCAAACTGGCCCAATAACAGACAAGGTCTAGCAGAT 528
|| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 467 ATTGATGACTGTTGGAAATGTGACCCAAACTGGCCTAATAACCGACAAGGTCTAGCAGAT 526
Query 529 TGTGGTATCGGGTTCGGACAGTACGCGTTGGGAGGCAAAGGTGGTCAGTTTTACTTTGTC 588
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 527 TGTGGTATCGGGTTCGGACAGTACGCATTAGGAGGCAAAGGTGGTCAGTTTTACTTCGTC 586
Query 589 ACTGATTCTTCCGACGATGATGCCGTCAACCCTAAACCGGGCACTCTCAGATATGGGGTG 648
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 587 ACTGATTCTTCCGACGATGATGCCGTCGACCCTAAACCAGGCACTCTCAGATATGGAGTG 646
Query 649 ATACAAGAAGAGCCATTGTGGATAGTGTTCCCAAGCAACATGATGATTAAACTAAAGCAA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ATACAAGAAGAGCCATTGTGGATAGTGTTCCCAAGCAACATGATGATTAAACTAAAGCAA 706
Query 709 GAGCTAATATTCAATAGTTACAAGACACTTGATGGGAGAGGAGCTAATGTTCACATTGTT 768
||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 707 GAGTTAATATTCAATAGTTACAAAACACTTGATGGAAGAGGAGCTAATGTTCACATTGTT 766
Query 769 GGTGGTGGCTGCATCACTCTTCAATATGTCTCCAATATCATCATTCACAACATCCATATC 828
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 767 GGTGGTGGCTGCATCACTCTTCAATATATCTCCAATATCATCATTCACAACATTCATATC 826
Query 829 CACCATTGTTACCAATCCGGGAATACTAACGTGCGGTCAAGTCCAACGCACTATGGGTTC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 827 CACCATTGTTACCAATCCGGGAATACTAACGTGCGGTCAAGTCCAACGCACTACGGGTTC 886
Query 889 AGAACGAAATCGGACGGTGATGGTATCTCTATATTCGGATCAAAGGACATTTGGATCGAC 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AGAACGAAATCGGACGGTGATGGTATCTCTATATTCGGATCAAAGGACATTTGGATCGAC 946
Query 949 CATTGTTCTCTATCGAGATGCAAGGACGGTCTGATAGATGCGGTAATGGGTTCCACAGGA 1008
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 947 CATTGTTCTCTATCGAGATGCAAGGACGGTCTGATAGATGCGGTGATGGGTTCCACAGGA 1006
Query 1009 ATAACTATATCGAACAACTTCTTCTCTCACCATAATGAAGTCATGCTTCTTGGTCACAGC 1068
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATTACTATATCGAACAACTTCTTCTCTCACCATAATGAAGTCATGCTTCTTGGTCACAGC 1066
Query 1069 GACCACTATGAACCAGACAGTGGCATGCAGGTAACAATTGCGTTTAATCACTTTGGAGAG 1128
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GATCACTATGAACCAGACAGTGGCATGCAGGTAACAATTGCGTTTAATCACTTTGGAGAG 1126
Query 1129 AAATTGATACAAAGGATGCCGAGGTGTCGACGTGGATATATCCATGTGGTTAATAACGAT 1188
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1127 AAATTGATACAAAGGATGCCGAGGTGTCGACGTGGATATATCCATGTTGTTAATAATGAT 1186
Query 1189 TTTACTCAATGGGAAATGTATGCCATTGGCGGTAGCGGTAACCCGACTATTAACAGTCAG 1248
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1187 TTTACTCAATGGGAAATGTATGCGATTGGTGGTAGCGGTAACCCAACTATTAACAGTCAG 1246
Query 1249 GGTAACCGCTACACCGCCCCAACCAACCCGTTTGCCAAGGAGGTGACAAAGAGAGTGGAA 1308
||||| || |||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 1247 GGTAATCGGTACACCGCCCCAACCAACCCATTCGCCAAAGAGGTGACTAAGAGAGTGGAA 1306
Query 1309 ACACCGGATGGTGATTGGAAAGGGTGGAATTGGAGATCGGAGGGGGACATTTTGGTGAAT 1368
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1307 ACACCGGATGGGGATTGGAAAGGGTGGAATTGGAGATCAGAGGGGGACATTTTGGTGAAT 1366
Query 1369 GGAGCCTTCTTCGTGGCATCCGGGGAAGGTGCGGAAATGAGGTATGAGAAGGCATATAGC 1428
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1367 GGAGCGTTCTTTGTGGCATCCGGTGAAGGTGCGGAAATGAGGTATGAGAAGGCATATAGC 1426
Query 1429 GTCGAGCCTAAATCCGCCTCATTCATCACCCAAATCACATTTCACTCTGGTGTTCTTGGC 1488
||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1427 GTCGAGCCTAAGTCCGCCTCATTCATTACACAAATCACATTTCACTCAGGTGTTCTTGGC 1486
Query 1489 GTTGGTGGCAGGAATAACAATCTGGGGATGTGGACTACTACTGGATCGGAAGGTACTAGC 1548
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1487 GTCGGCGGCAGGAATAACAATCTGGGGATGTGGACTACTACTGGATCGGAAGGTAATAGC 1546
Query 1549 GGTTTAGATTCTTATAATGACTATACCGATGAAATGTCTGGC-GCTGGTTCAACCAACCG 1607
|||||||||||||| || |||||||||||||||||||||| | || |||||||| |||||
Sbjct 1547 GGTTTAGATTCTTACAACGACTATACCGATGAAATGTCTG-CTGCCGGTTCAACTAACCG 1605
Query 1608 GTTATCTTTTTCAGTTCTTGTTTT--C-TT---GCTAAGTTCGATATCATATTTGGTCGT 1661
|||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
Sbjct 1606 GTTATCTTTTTCAGTTCTTGTTTTAGCATTCATGCTAAGTTCGATATCATATTTGGTCAT 1665
Query 1662 GTTCACTTCTTCAACCCAAATGTTTATGTTGTAACATGAATTGAATTTACCTAT-TTT-A 1719
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1666 GTCCACTTCTTCAACCCAAATGTTTATGTTGTAACATGAATTGAATTTACCTATATTTTA 1725
Query 1720 TCAAGGAACAAGCAAAAAGTT 1740
||||||||||||| |||||||
Sbjct 1726 TCAAGGAACAAGCGAAAAGTT 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5