BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53200.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485695 jgi|Araly1|485695|fgenesh2_kg.5__1687__AT3G53200.1 1212 0.0
> Ahg485695 jgi|Araly1|485695|fgenesh2_kg.5__1687__AT3G53200.1
Length=901
Score = 1212 bits (656), Expect = 0.0
Identities = 768/821 (94%), Gaps = 11/821 (1%)
Strand=Plus/Plus
Query 1 AAAGCACAATTTTAGAAAGGATTTAATTAAGTATAATAACACAAAG-AA-A-CAG-AG-T 55
||||||||| |||||||||||| ||||||| ||||||||||||| || | || ||
Sbjct 1 AAAGCACAAACTTAGAAAGGATTCAATTAAG--TAATAACACAAAGAAAGAGAAGAAGAA 58
Query 56 A-AAAGAAAGAAAAATGGATTTTAAGAAGGAAGAAACACTTCGTAGAGGGCCATGGCTCG 114
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 59 AGAAAGAAAGAAAAATGGATTTTAAGAAGGAAGAAACACTTCGTAGAGGGCCATGGCTTG 118
Query 115 AAGAAGAAGACGAACGGCTAGTGAAGGTCATTAGTCTTTTGGGAGAACGTCGTTGGGATT 174
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 119 AAGAAGAAGACGAACGGCTAGTGAAGTTCATAACCCTTTTGGGAGAACGTCGTTGGGATT 178
Query 175 CTTTAGCAATAGTTTCCGGTTTGAAGAGGAGTGGTAAGAGTTGCAGGCTAAGGTGGATGA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTTTAGCAATAGTTTCCGGTTTGAAGAGGAGTGGTAAGAGTTGCAGGCTAAGGTGGATGA 238
Query 235 ACTATCTGAATCCGACTCTGAAGCGTGGACCGATGAGTCAAGAAGAAGAGAGAATCATCT 294
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 ACTATCTGAATCCGAGTCTGAAGCGTGGGCCGATGAGTCAAGAAGAAGAGAGAATCATCT 298
Query 295 TTCAGCTCCATGCTCTATGGGGTAACAAGTGGTCGAAGATTGCGAGAAGATTACCCGGTA 354
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCAGCTCCATGCTCTCTGGGGTAACAAGTGGTCGAAGATTGCGAGAAGATTACCCGGTA 358
Query 355 GGACTGATAACGAGATAAAGAACTATTGGAGAACTCATTATAGAAAGAAACAGGAAGCTC 414
|||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 359 GGACTGATAACGAGATTAAGAACTTTTGGAGAACTCATTCTAGAAAGAAAGAGGAAGCTC 418
Query 415 AAAACTATGGAAAGCTCTTTGAGTGGAGAGGAAATACAGGAGAAGAATTGTTGCACAAGT 474
||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 419 AAAACTATGTAAAGCTGTTTGAGTTCAGAGGAAAAACAGGAGAAGAATTGTTGCACAAGT 478
Query 475 ATAAGGAAACAGAGATCACTAGGACAAAGACGACGTCTCAAGAACATGGTTTTGTTGAAG 534
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 479 ATAAGGAAACAGAGATCACTAGGACAAGGACAACGTCTCAAGAACATGGTTTTGATGAAG 538
Query 535 TTGTGAGCATGGAAAGTGGTAAAGAAGCCAACGGTGGTGTTGGTGGAAGAGAAAGCTTCG 594
|||||||||||||||||| ||||||| |||| ||||| || |||||||| |||||| ||
Sbjct 539 TTGTGAGCATGGAAAGTGCTAAAGAAACCAATTGTGGTATTTGTGGAAGACAAAGCTACG 598
Query 595 GTGTTATGAAATCACCGTATGAAAATCGGATTTCGGATTGGATATCAGAGATTTCTACTG 654
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 599 GTGTTATGAATTCACCGTATGAAAATCGGATTTCGGATTGGATATCAGAGATTTCGCCAG 658
Query 655 ACCAGAGTGAAGCAAATCTTTCAGAAGATCACAGCAGCAATAGCTGCAGTGAGAACAATA 714
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |
Sbjct 659 ACCAGAGTGAAGCAAATCTTTCAGAAGACCACAGCAGCAGTAGC---AGTGAGAACAACA 715
Query 715 TTAACATTGGTACTTGGTGGTTTCAAGAGACTAGGGACTTTGAGGAGTTTTCATGTTCTC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTAACATTGGTACTTGGTGGTTTCAAGAGACTAGGGACTTTGAGGAGTTTTCATGTTCTC 775
Query 775 TATGGTCATAATTCTAAAGTTGGTTTATTTACTTTTTAACT 815
||||||||||||||| ||||| |||||||||||||||||||
Sbjct 776 TATGGTCATAATTCTTAAGTTTGTTTATTTACTTTTTAACT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5