BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53210.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485696 jgi|Araly1|485696|fgenesh2_kg.5__1688__AT3G53210.1 1714 0.0
> Ahg485696 jgi|Araly1|485696|fgenesh2_kg.5__1688__AT3G53210.1
Length=1188
Score = 1714 bits (928), Expect = 0.0
Identities = 1105/1190 (93%), Gaps = 13/1190 (1%)
Strand=Plus/Plus
Query 2 CTTCCGGCGGAGAACGATGTCTCCGATACCGGAAAGGGCAAAGCTTCACATAGCTATGGT 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCCGGCGGAGAAAGATGTCTCCGATACCGGAAAGGGCAAAGCTTCACATAGCTATGGT 60
Query 62 GGTGTTTCAGACAGGCTACGCTGGTAATCACGTGATCATGAGATATGCTCTAAACTTAGG 121
||||||||||||||| ||||| || ||||| |||||| | ||||| ||||||||||||||
Sbjct 61 GGTGTTTCAGACAGGATACGCAGGGAATCATGTGATCGTAAGATACGCTCTAAACTTAGG 120
Query 122 AGTAAGCAAGCTCGTCTTCCCACTTTACCGCACCATCGTCGCTTTCTCTGTTCTTGCTCC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTAAGCAAGCTCGTCTTCCCACTTTACCGCACCATCGTCGCTTTCTCTGTTCTTGCTCC 180
Query 182 CTCTGCTTACTTCCTTGaaaaaaaaGAAAGACCGGCGATGAAAATCAGTTTTCTGATTCA 241
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 181 CTCTGCTTACTTCCTTGAAAAAAAAGAAAGACCGGCCATGAAAACCAGTTTTCTCATTCA 240
Query 242 ATTCTTCCTTCTTGGACTCGTTGGAATAACGTTAAACCAAGGATTTTACATCTTTGGATT 301
|||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 241 GTTCTTCCTTCTTGGACTCCTTAGAATAACATTAAACCAAGGATTTTACATCTTTGGATT 300
Query 302 GGACAATACCTCACCAACATTCGCATCAGCAACTGAAAATGTTGTTCCTGCTGTTTCATT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGACAATACCTCACCAACATTCGCATCAGCAACTGAAAATGTTGTTCCTGCTGTTTCATT 360
Query 362 CCTCATGGCAGCGTTGCTCGGAATAGAGAAGGTGGAATGGAAGAGGAAAGATGGTATAGC 421
|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 361 CCTCATGGCAGCGTCGCTCGGAATAGAGAAGGTGAAATGGAAGAGGAAAGACGGTATAGC 420
Query 422 CAAAGTGGTGGGGACAATTGTATCTGTCGCAGGCTCTTTGGTTATAACACTCTATAAAGG 481
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TAAAGTGGTGGGCACAATTGTATCCGTCGCAGGCTCTTTGGTTATAACACTCTATAAAGG 480
Query 482 ACCAACCATTTACCAACCGAGTCTGAATATAGTGAACCAAACTATTAAACCTGAAGAAGC 541
||| |||||||||||||||||| || | || |||||||| |||| ||| ||||||||||
Sbjct 481 ACCCACCATTTACCAACCGAGTTTGCGTTTAATGAACCAACCTATCAAAGCTGAAGAAGC 540
Query 542 AGAGGAAGAAAACAAGAACTGGACGTTGGGATGTCTCTGTTTGATGGGTCACTGTTTATG 601
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 541 AGAGGAACAAAACAAGAACTGGACATTGGGATGTCTATGTTTGATGGGTCACTGTTTATG 600
Query 602 TTGGTCAAGTTGGATTGTGTTACAATCACCATTGCTTAAAAAGTACCCAGCTCGCTTCTC 661
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 601 TTGGTCAAGTTGGATTGTGTTGCAGTCACCATTGCTTAAGAAGTACCCAGCTCGCTTCTC 660
Query 662 CTTCGTCTCCTAT-TCTTGCTTTTTCGCAGTGATACAGTTCTTTGGAATTTCGGCTTATT 720
||||||||||| | |||||||||||||| ||| |||||||||||||||| || |||||||
Sbjct 661 CTTCGTCTCCT-TCTCTTGCTTTTTCGCCGTGTTACAGTTCTTTGGAATCTCTGCTTATT 719
Query 721 TCGAGAGAGATCTAGAGAGGTGGAAGATAATATCAGGAGGCGAATTATACGCGTTACTCT 780
|||||||||||| |||||| |||||||||| |||||||||||||||||| || ||||| |
Sbjct 720 TCGAGAGAGATCAAGAGAGATGGAAGATAACATCAGGAGGCGAATTATATGCATTACTAT 779
Query 781 ACACTGGTTTAGTTGGTTCAGCAATGGTGTTTGCAATACAAATATATGTAGTGGAAAGAG 840
|||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 780 ACACCGGTTTAATTGGTTCAGCAATGGTGTTTGCAATACAAATATATGTGGTGGAGAGAG 839
Query 841 GAGGACCTCTGTTTGTATCAGCGTATTTGCCTCTTCAAACTTTGATTGCTGCTGTTTTAG 900
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 840 GAGGACCTCTGTTTGTATCAGCGTATTTGCCTCTTCAAACTTTAATTGCTGCTATTTTAG 899
Query 901 CTACTTTAGCTCTTGGTGAACACTTTTACCTTGGAGGATTGATAGGTGCAATACTAATCA 960
| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 900 CCACTTTTGCTCTTGGTGAACACTTCTACCTTGGAGGATTGATTGGTGCAATACTAATCA 959
Query 961 TGAGTGGACTATACTTAGTTGTGATGGGAAAGAGTTGGGAGAATCAAGCTCTTTGCCAAC 1020
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TGAGTGGACTATACTTGGTTGTGATGGGAAAGAGTTGGGAGAATCAAGCTTTTTGCCAAC 1019
Query 1021 AACAACAACACATGATTTCTTCAGCAGCATCAGATTTTGGTGATGAAGAAGACTACCATA 1080
|||||||||||||||||||||||| |||||| || ||||||| ||||||| || ||||||
Sbjct 1020 AACAACAACACATGATTTCTTCAGAAGCATCCGAATTTGGTGGTGAAGAAAACCACCATA 1079
Query 1081 ATAATAA-A--CCAAGATCTCCTATTAGTCAACCATTAATTTCTTCCTAAATTTTGTTAG 1137
||||||| | ||||||||| || ||| |||||||||||||||||| ||||||||| |||
Sbjct 1080 ATAATAATAAACCAAGATCTTCTCTTAATCAACCATTAATTTCTTCTTAAATTTTGGTAG 1139
Query 1138 ATCCTATTTATGTCT-TAAA---TT---CCTAGTTCCTACTCTCTTCCTC 1180
|| |||||||||| | |||| || ||||||||||||| |||| |||
Sbjct 1140 ATGCTATTTATGT-TATAAAAGGTTGTTCCTAGTTCCTACTTTCTTTCTC 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5