BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53220.1

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485697 jgi|Araly1|485697|fgenesh2_kg.5__1689__AT3G53220.1         641    0.0  


> Ahg485697 jgi|Araly1|485697|fgenesh2_kg.5__1689__AT3G53220.1
Length=448

 Score =  641 bits (347),  Expect = 0.0
 Identities = 410/440 (93%), Gaps = 6/440 (1%)
 Strand=Plus/Plus

Query  29   aaacaaaaa-aaTGAGAAAGCAAGAATCAGAGGGAGCGAATCTTGAATTCGAATCCAAAT  87
            ||||||||| |||||| ||||||||||| |||||||| ||| |||| |||||||||||||
Sbjct  12   AAACAAAAACAATGAGCAAGCAAGAATCGGAGGGAGCAAATATTGATTTCGAATCCAAAT  71

Query  88   CAAATGACAATGGAAATGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTG  147
            ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  72   CAAATCACAATGGCAACGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTG  131

Query  148  ACGACAT-AAAGTCTTCCAAATCTCCGGCTGTTATTAACTATGGAGCTTCTTGGTGTGGA  206
            |||| || ||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  132  ACGATATCAAA-TCTTCCAAATCTCCGGCTGTTATTAACTACGGAGCTTCATGGTGTGGA  190

Query  207  GTTTGTAGCCAGATTCTTCCTGCATTCCGAAAGCTCAGCAACAGTTTCTCGAAGCTCAAG  266
            ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  191  GTTTGTAGCCAAATTCTTCCTGCATTCCAAAAGCTCAGCAAAAGTTTCTCGAAGCTCAAG  250

Query  267  TTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGTCACATCCGTTACACACCC  326
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  251  TTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGCCACATCCGTTACACACCC  310

Query  327  ACGTTTCAGTTTTACAGAGACGGCGAGAAAGTCGATGAGATGTTTGGAGCTGGTGAACAG  386
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct  311  ACATTTCAGTTTTACAGAGACGGCGAAAAAGTCGATGAGATGTTTGGAGCTGGTGAAGAG  370

Query  387  AGGCTCCATGATCGTCTTTGGCTTCACTCTTGAATATGTTCATCAAATATTAACTA-TGA  445
            || |||||||||||||||||||||||||||||| ||||||||| ||| || || || | |
Sbjct  371  AGACTCCATGATCGTCTTTGGCTTCACTCTTGACTATGTTCATAAAA-ATCAAATAATTA  429

Query  446  AAATCTGCATTCCTTTTGTG  465
            || |||||||||||||||||
Sbjct  430  AA-TCTGCATTCCTTTTGTG  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18390993898


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5