BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53232.1

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938222 jgi|Araly1|938222|scaffold_502413.1                        324    4e-88


> Ahg938222 jgi|Araly1|938222|scaffold_502413.1
Length=214

 Score =  324 bits (175),  Expect = 4e-88
 Identities = 189/196 (96%), Gaps = 0/196 (0%)
 Strand=Plus/Plus

Query  112  TAATGGGAGAAGAGAACAGCACGAGCGGGACATGCAAGCCGTCCAAGACATTCAAGGCGA  171
            ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  19   TAATGGGAGAAGAAAACATCACGAGCGGGACATGCAAGCCGTCCAAGACGTTCAAGGCGA  78

Query  172  AGTGTAGCCACATGGTGAGGAAACAGCGAGCCAAGTTTTACATCCTTGGCCGTTGTCTTG  231
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  79   AGTGTAGCCACATGGTGAAGAAACAGCGAGCCAAGTTTTACATCCTTGGCCGTTGTATTG  138

Query  232  CCATGTTAGTCTGCGGGCGTGGCCGTGACCGCGAGCGTGACCGTATATTGATTTAGATCT  291
            ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  139  CCATGTTAGTCTGCGGGCGTGGCCGTGACCGCGAGCGCGACCGTATTTTGATTTAGATCT  198

Query  292  TTACCTTATgttttgt  307
            ||||||||||||||||
Sbjct  199  TTACCTTATGTTTTGT  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16101658558


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5