BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53235.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938223 jgi|Araly1|938223|scaffold_502414.1                        309    8e-84


> Ahg938223 jgi|Araly1|938223|scaffold_502414.1
Length=292

 Score =  309 bits (167),  Expect = 8e-84
 Identities = 194/206 (94%), Gaps = 5/206 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGGTTATGAGCTCTTTAACTGTGGAGGGAGGAGGGAGAGGGATATACACAAAAGAT  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  66   ATGGTGGTTATGAGCTCTTTCACTGTGGAGGGAGGAGGGAGAGGGATATACACAAAAGAT  125

Query  61   CAGAGGCTTCACCATGTTCAGAAGGACAGATCCGCCATTCCATCAACAAGAGGAGTAGAC  120
            |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  126  CAGAGGCTTCACCATGTTCAGAAGGACAGATCCGTCATTCCATCAGCAAGAGGAGTAGAC  185

Query  121  AACCACCATAACATTCCAAGACAAAACTTTGACAATTGGGGTG-CAAACGGAGGAGGAGG  179
            ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct  186  AACCACCATAACATTCCAAGACAAAACTTTGACAATTGGGGTGGCAA-CGGAGGAGAAGG  244

Query  180  TGGTGGTGGTGGAGAAGATGGAACAG  205
              |||||||   ||| ||||||||||
Sbjct  245  CAGTGGTGG---AGACGATGGAACAG  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5