BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53235.1 Length=345 Score E Sequences producing significant alignments: (Bits) Value Ahg938223 jgi|Araly1|938223|scaffold_502414.1 309 8e-84 > Ahg938223 jgi|Araly1|938223|scaffold_502414.1 Length=292 Score = 309 bits (167), Expect = 8e-84 Identities = 194/206 (94%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 1 ATGGTGGTTATGAGCTCTTTAACTGTGGAGGGAGGAGGGAGAGGGATATACACAAAAGAT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 66 ATGGTGGTTATGAGCTCTTTCACTGTGGAGGGAGGAGGGAGAGGGATATACACAAAAGAT 125 Query 61 CAGAGGCTTCACCATGTTCAGAAGGACAGATCCGCCATTCCATCAACAAGAGGAGTAGAC 120 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 126 CAGAGGCTTCACCATGTTCAGAAGGACAGATCCGTCATTCCATCAGCAAGAGGAGTAGAC 185 Query 121 AACCACCATAACATTCCAAGACAAAACTTTGACAATTGGGGTG-CAAACGGAGGAGGAGG 179 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| Sbjct 186 AACCACCATAACATTCCAAGACAAAACTTTGACAATTGGGGTGGCAA-CGGAGGAGAAGG 244 Query 180 TGGTGGTGGTGGAGAAGATGGAACAG 205 ||||||| ||| |||||||||| Sbjct 245 CAGTGGTGG---AGACGATGGAACAG 267 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12247944069 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5