BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53250.1

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg348420 jgi|Araly1|348420|fgenesh1_pg.C_scaffold_5001812           540    3e-153


> Ahg348420 jgi|Araly1|348420|fgenesh1_pg.C_scaffold_5001812
Length=390

 Score =  540 bits (292),  Expect = 3e-153
 Identities = 313/323 (97%), Gaps = 2/323 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGAGCAAATCCATAGTTCTACCTTGTTGTACATCTTCATGCGAGAGTTGCTGCGAC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  46   ATGAAGAGCAAATCCATAGTCCTACCTTGTTGTACATCTTCATGCGAGAGTTGCTGCGAC  105

Query  61   AAGGTTTCTTGGGGATTCAAGAAGGAAAATGAAG-CAATACCTAAAGATGTTCCGAGAGG  119
            |||||||||||||| |||||||||| |||||||| || |||||||||||||||| |||||
Sbjct  106  AAGGTTTCTTGGGGGTTCAAGAAGGGAAATGAAGTCA-TACCTAAAGATGTTCCAAGAGG  164

Query  120  ACATTTGGTAGTGTATGTTGGTGATGATTACAAGAGGTTTGTGATAAAGATGAGTTTGCT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  165  ACATTTGGTAGTGTATGTTGGTGATGATTACAAGAGGTTTGTGATAAAGATGAGTTTGCT  224

Query  180  TACTCATCCAATCTTTAAAGCATTGCTTGATCAAGCGCAAGATGCTTATAATTCATCAAG  239
            ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  225  TACACATCCAATCTTTAAAGCATTGCTTGATCAAGCTCAAGATGCTTATAACTCATCAAG  284

Query  240  ACTATGGATTCCATGTGATGAGAACACTTTTCTCGATGTTGTTCGTTGCAGTGGCGCTCC  299
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  285  ACTATGGATTCCATGTGATGAGAACACTTTCCTCGATGTTGTTCGTTGCAGTGGCGCTCC  344

Query  300  TCAGCATCAGAGAAACTGCATTG  322
            |||||||||||||||||||||||
Sbjct  345  TCAGCATCAGAGAAACTGCATTG  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11675610234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5